Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_900090.1 Data

Correlation between Smp_900090.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_900090.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_900090.1 0 -3.47 -3.69 0.48 0.62

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_900090.1 SmLINC00369-IBu 0.83 9.34e-05 1.30e-03
Smp_900090.1 SmLINC00525-IBu 0.84 7.11e-05 1.10e-03
Smp_900090.1 SmLINC00548-IBu 0.85 5.38e-05 9.00e-04
Smp_900090.1 SmLINC00633-IBu 0.82 1.00e-04 1.80e-03
Smp_900090.1 SmLINC01084-IBu 0.88 1.47e-05 3.00e-04
Smp_900090.1 SmLINC01122-IBu 0.85 5.00e-05 8.00e-04
Smp_900090.1 SmLINC01139-IBu 0.85 4.86e-05 8.00e-04
Smp_900090.1 SmLINC01431-IBu 0.86 3.52e-05 6.00e-04
Smp_900090.1 SmLINC01538-IBu 0.88 1.24e-05 3.00e-04
Smp_900090.1 SmLINC01569-IBu 0.85 4.30e-05 7.00e-04
Smp_900090.1 SmLINC01733-IBu 0.87 2.02e-05 4.00e-04
Smp_900090.1 SmLINC01746-IBu 0.87 1.87e-05 4.00e-04
Smp_900090.1 SmLINC02084-IBu 0.81 2.00e-04 2.60e-03
Smp_900090.1 SmLINC02546-IBu 0.83 1.00e-04 1.50e-03
Smp_900090.1 SmLINC03309-IBu 0.86 3.71e-05 6.00e-04
Smp_900090.1 SmLINC03395-IBu -0.82 1.00e-04 2.10e-03
Smp_900090.1 SmLINC03693-IBu 0.80 3.00e-04 3.10e-03
Smp_900090.1 SmLINC03849-IBu -0.81 2.00e-04 2.40e-03
Smp_900090.1 SmLINC04478-IBu 0.83 1.00e-04 1.40e-03
Smp_900090.1 SmLINC04521-IBu 0.85 4.79e-05 8.00e-04
Smp_900090.1 SmLINC04663-IBu 0.85 5.65e-05 9.00e-04
Smp_900090.1 SmLINC05147-IBu 0.84 6.34e-05 1.00e-03
Smp_900090.1 SmLINC05258-IBu 0.80 2.00e-04 2.80e-03
Smp_900090.1 SmLINC06024-IBu 0.87 1.81e-05 4.00e-04
Smp_900090.1 SmLINC06444-IBu 0.83 1.00e-04 1.60e-03
Smp_900090.1 SmLINC06449-IBu 0.81 2.00e-04 2.70e-03
Smp_900090.1 SmLINC06490-IBu -0.82 1.00e-04 1.70e-03

Correlation between Smp_900090.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_900090.1 0 -3.47 -3.69 0.48 0.62

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159070.2 Smp_900090.1 0.91 1.87e-06 8.30e-05