Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_213620.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_213620.1 0 0.42 2.27 3.80 4.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_213620.1 SmLINC00282-IBu -0.81 2.00e-04 2.30e-03
Smp_213620.1 SmLINC00554-IBu -0.90 4.44e-06 1.00e-04
Smp_213620.1 SmLINC00556-IBu -0.88 1.14e-05 2.00e-04
Smp_213620.1 SmLINC02255-IBu -0.87 1.69e-05 3.00e-04
Smp_213620.1 SmLINC02630-IBu -0.84 8.47e-05 1.20e-03
Smp_213620.1 SmLINC02657-IBu -0.82 1.00e-04 1.70e-03
Smp_213620.1 SmLINC02888-IBu -0.87 2.14e-05 4.00e-04
Smp_213620.1 SmLINC05284-IBu -0.84 7.77e-05 1.10e-03
Smp_213620.1 SmLINC06128-IBu -0.85 4.05e-05 7.00e-04
Smp_213620.1 SmLINC06535-IBu -0.84 6.70e-05 1.00e-03
Smp_213620.1 SmLINC06903-IBu -0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_109240.1 0 -1.29 -3.52 -6.3 -10.11
Smp_213620.1 0 0.42 2.27 3.8 4.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109240.1 Smp_213620.1 -0.9 4.59e-06 1.00e-04