Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_213140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_213140.1 0 1.55 -1.08 2.14 3.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_213140.1 SmLINC00001-IBu 0.85 4.92e-05 8.00e-04
Smp_213140.1 SmLINC00004-IBu 0.83 9.55e-05 1.30e-03
Smp_213140.1 SmLINC02376-IBu 0.87 1.79e-05 4.00e-04
Smp_213140.1 SmLINC03326-IBu 0.83 9.54e-05 1.30e-03
Smp_213140.1 SmLINC04235-IBu 0.88 1.19e-05 3.00e-04
Smp_213140.1 SmLINC04423-IBu 0.80 2.00e-04 2.90e-03
Smp_213140.1 SmLINC04627-IBu 0.82 1.00e-04 2.00e-03
Smp_213140.1 SmLINC06239-IBu 0.88 1.18e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_213140.1 0 1.55 -1.08 2.14 3.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_144440.1 Smp_213140.1 0.9 4.65e-06 1.00e-04
Smp_159650.1 Smp_213140.1 0.9 4.06e-06 1.00e-04