Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_212510.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212510.1 SmLINC00001-IBu -0.84 6.44e-05 1.00e-03
Smp_212510.1 SmLINC00004-IBu -0.87 1.74e-05 3.00e-04
Smp_212510.1 SmLINC00294-IBu 0.87 1.72e-05 3.00e-04
Smp_212510.1 SmLINC00369-IBu -0.87 1.80e-05 4.00e-04
Smp_212510.1 SmLINC00376-IBu -0.82 1.00e-04 2.00e-03
Smp_212510.1 SmLINC00525-IBu -0.86 2.71e-05 5.00e-04
Smp_212510.1 SmLINC00548-IBu -0.80 3.00e-04 3.10e-03
Smp_212510.1 SmLINC00633-IBu -0.82 1.00e-04 1.80e-03
Smp_212510.1 SmLINC01084-IBu -0.89 6.84e-06 2.00e-04
Smp_212510.1 SmLINC01122-IBu -0.83 8.93e-05 1.30e-03
Smp_212510.1 SmLINC01431-IBu -0.89 5.23e-06 1.00e-04
Smp_212510.1 SmLINC01538-IBu -0.81 2.00e-04 2.60e-03
Smp_212510.1 SmLINC01569-IBu -0.82 1.00e-04 1.70e-03
Smp_212510.1 SmLINC01637-IBu 0.83 1.00e-04 1.40e-03
Smp_212510.1 SmLINC01733-IBu -0.81 2.00e-04 2.60e-03
Smp_212510.1 SmLINC02084-IBu -0.87 1.57e-05 3.00e-04
Smp_212510.1 SmLINC02394-IBu -0.83 9.56e-05 1.30e-03
Smp_212510.1 SmLINC02539-IBu -0.80 3.00e-04 3.10e-03
Smp_212510.1 SmLINC02546-IBu -0.84 6.90e-05 1.00e-03
Smp_212510.1 SmLINC03395-IBu 0.84 8.61e-05 1.20e-03
Smp_212510.1 SmLINC03927-IBu -0.83 1.00e-04 1.40e-03
Smp_212510.1 SmLINC04421-IBu -0.89 8.13e-06 2.00e-04
Smp_212510.1 SmLINC04423-IBu -0.85 4.69e-05 8.00e-04
Smp_212510.1 SmLINC04478-IBu -0.84 7.23e-05 1.10e-03
Smp_212510.1 SmLINC04521-IBu -0.84 6.23e-05 1.00e-03
Smp_212510.1 SmLINC05147-IBu -0.84 8.21e-05 1.20e-03
Smp_212510.1 SmLINC05289-IBu -0.85 5.60e-05 9.00e-04
Smp_212510.1 SmLINC05604-IBu -0.86 3.05e-05 5.00e-04
Smp_212510.1 SmLINC06024-IBu -0.92 1.00e-06 5.16e-05
Smp_212510.1 SmLINC06145-IBu -0.80 2.00e-04 2.90e-03
Smp_212510.1 SmLINC06489-IBu 0.89 6.64e-06 1.00e-04
Smp_212510.1 SmLINC06490-IBu 0.92 6.41e-07 3.75e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00208-IBu 0 0.00 1.64 7.32 7.95
SmLINC00378-IBu 0 0.65 -0.05 -4.62 -5.01
SmLINC01461-IBu 0 -0.51 -1.70 3.51 4.54
SmLINC01925-IBu 0 0.00 0.00 8.15 8.98
SmLINC02987-IBu 0 0.03 -0.66 -5.30 -5.63
SmLINC04001-IBu 0 0.59 0.46 -3.65 -5.58
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC04404-IBu 0 0.00 0.00 8.28 8.99
SmLINC04869-IBu 0 -0.41 -0.13 -8.66 -8.66
SmLINC05906-IBu 0 0.43 -0.01 -5.65 -6.57
SmLINC05932-IBu 0 0.00 0.00 8.91 9.64
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06164-IBu 0 0.11 -0.61 -7.94 -5.65
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06565-IBu 0 0.04 -0.07 -5.81 -2.08
SmLINC06799-IBu 0 -0.52 -0.67 -3.14 -5.31
SmLINC07010-IBu 0 0.22 -0.04 -9.27 -12.84
SmLINC07011-IBu 0 0.12 -0.23 -13.69 -11.81
Smp_002920.1 0 0.04 -0.86 -3.56 -4.70
Smp_003330.1 0 -1.88 -0.84 3.09 3.58
Smp_005260.2 0 -0.36 -1.30 -5.79 -5.89
Smp_021540.1 0 -0.87 -1.15 -5.24 -5.25
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_026340.1 0 -0.76 -1.34 2.33 3.13
Smp_026820.1 0 -3.23 -3.72 0.76 1.23
Smp_027360.1 0 -2.41 -5.03 1.31 1.70
Smp_028860.1 0 -0.07 -0.66 -4.17 -4.88
Smp_030180.1 0 -0.12 -1.47 3.03 3.99
Smp_032580.1 0 -0.52 -0.98 -8.52 -6.88
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_036780.1 0 -1.09 0.17 2.85 3.49
Smp_037530.1 0 -0.36 -0.67 3.45 4.52
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_039970.1 0 -1.25 -1.02 2.95 3.81
Smp_045950.1 0 0.07 -1.04 -4.82 -3.27
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_050760.1 0 -0.37 1.37 4.18 4.84
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_055630.1 0 -1.39 -1.99 2.49 3.08
Smp_055900.1 0 -8.50 -8.50 3.36 4.13
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058170.1 0 -0.02 0.05 -6.42 -4.35
Smp_058190.1 0 -1.48 -0.65 2.42 3.35
Smp_061590.1 0 -0.29 -0.52 -4.09 -3.95
Smp_062720.1 0 -0.73 -0.47 -6.25 -5.83
Smp_064590.1 0 -0.47 -1.22 -6.85 -6.21
Smp_068920.3 0 -0.20 -1.33 -4.27 -3.53
Smp_071640.1 0 -0.48 -1.03 -6.28 -5.01
Smp_074190.1 0 0.86 1.32 5.85 6.79
Smp_074900.1 0 -2.11 -0.49 3.78 4.21
Smp_078550.1 0 -0.05 -0.57 -4.38 -4.91
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_080280.1 0 -0.42 -0.06 -4.59 -4.87
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_092990.1 0 -0.73 0.22 3.72 4.66
Smp_099810.1 0 -0.11 -0.66 -4.18 -4.40
Smp_103000.1 0 -0.53 -0.90 2.58 3.25
Smp_109300.1 0 0.26 -0.46 -4.85 -6.86
Smp_110280.1 0 -0.83 -0.25 -7.88 -7.44
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36
Smp_122830.1 0 -0.22 -0.24 -3.98 -3.99
Smp_125020.1 0 1.53 2.59 7.25 8.21
Smp_126850.1 0 -0.32 -0.59 -8.40 -9.05
Smp_131790.1 0 -2.09 -2.80 1.12 2.06
Smp_132160.1 0 -0.52 -0.30 -3.96 -5.23
Smp_136620.1 0 -0.33 -3.32 5.55 6.76
Smp_136700.1 0 -0.70 -1.05 4.06 5.24
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_137840.1 0 -0.18 -0.46 5.11 5.67
Smp_137960.1 0 -0.78 -1.94 2.47 3.16
Smp_140610.1 0 0.89 2.69 7.09 8.08
Smp_141020.1 0 -0.45 -0.94 -9.20 -5.95
Smp_146460.1 0 -2.57 1.98 7.27 8.23
Smp_149820.1 0 -1.15 -1.28 3.81 4.39
Smp_152970.1 0 0.26 1.74 6.26 7.07
Smp_153300.1 0 0.05 1.04 3.29 3.92
Smp_154640.1 0 -0.85 -0.62 -4.60 -4.76
Smp_155610.1 0 -3.75 -6.34 0.72 0.81
Smp_155960.1 0 -0.73 -2.41 -7.35 -7.96
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_159730.2 0 -0.26 -0.69 -4.33 -4.68
Smp_160000.1 0 0.21 0.15 -4.03 -4.29
Smp_160010.1 0 -3.09 -4.10 1.42 1.68
Smp_166500.2 0 -9.58 -3.24 2.58 2.78
Smp_170370.1 0 -2.98 -4.66 1.78 2.30
Smp_173660.1 0 -1.25 0.04 4.14 4.91
Smp_177900.1 0 -0.46 -0.44 -3.24 -4.66
Smp_180440.1 0 -0.08 -1.33 2.82 3.54
Smp_181060.1 0 0.49 1.00 7.02 7.96
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_196480.1 0 -0.75 -2.06 3.39 4.05
Smp_198470.1 0 0.52 1.00 4.04 4.70
Smp_198650.1 0 -0.01 -1.08 -4.05 -4.59
Smp_201030.1 0 -0.08 -0.27 5.30 5.74
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
Smp_202340.1 0 0.90 1.72 -6.17 -6.91
Smp_203780.1 0 -0.56 -2.16 2.17 3.14
Smp_204940.1 0 0.14 1.05 -5.47 -5.25
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_210190.1 0 -0.41 -3.03 1.81 2.83
Smp_212100.1 0 -0.28 -1.09 -4.30 -3.94
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_900100.1 0 -4.19 -2.73 1.96 2.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212510.1 SmLINC00208-IBu -0.90 3.03e-06 1.00e-04
Smp_212510.1 SmLINC00378-IBu 0.90 4.02e-06 1.00e-04
Smp_212510.1 SmLINC01461-IBu -0.90 4.66e-06 1.00e-04
Smp_212510.1 SmLINC01925-IBu -0.90 4.64e-06 1.00e-04
Smp_212510.1 SmLINC02987-IBu 0.95 3.96e-08 5.76e-06
Smp_212510.1 SmLINC04001-IBu 0.90 2.55e-06 1.00e-04
Smp_212510.1 SmLINC04259-IBu 0.93 4.65e-07 3.12e-05
Smp_212510.1 SmLINC04404-IBu -0.90 3.17e-06 1.00e-04
Smp_212510.1 SmLINC04869-IBu 0.90 2.55e-06 1.00e-04
Smp_212510.1 SmLINC05906-IBu 0.90 3.04e-06 1.00e-04
Smp_212510.1 SmLINC05932-IBu -0.90 3.28e-06 1.00e-04
Smp_212510.1 SmLINC06024-IBu -0.92 1.00e-06 5.37e-05
Smp_212510.1 SmLINC06164-IBu 0.94 1.87e-07 1.66e-05
Smp_212510.1 SmLINC06490-IBu 0.92 6.41e-07 3.90e-05
Smp_212510.1 SmLINC06565-IBu 0.90 2.81e-06 1.00e-04
Smp_212510.1 SmLINC06799-IBu 0.90 3.23e-06 1.00e-04
Smp_212510.1 SmLINC07010-IBu 0.97 3.29e-10 2.50e-07
Smp_212510.1 SmLINC07011-IBu 0.97 9.95e-10 5.08e-07
Smp_212510.1 Smp_002920.1 0.96 1.12e-08 2.47e-06
Smp_212510.1 Smp_003330.1 -0.91 2.02e-06 8.76e-05
Smp_212510.1 Smp_005260.2 0.92 5.94e-07 3.70e-05
Smp_212510.1 Smp_021540.1 0.90 3.93e-06 1.00e-04
Smp_212510.1 Smp_023140.1 0.91 2.19e-06 9.28e-05
Smp_212510.1 Smp_026340.1 -0.92 5.68e-07 3.59e-05
Smp_212510.1 Smp_026820.1 -0.97 1.66e-09 7.07e-07
Smp_212510.1 Smp_027360.1 -0.94 1.46e-07 1.40e-05
Smp_028860.1 Smp_212510.1 0.92 9.16e-07 5.01e-05
Smp_212510.1 Smp_030180.1 -0.91 2.40e-06 9.89e-05
Smp_212510.1 Smp_032580.1 0.94 1.22e-07 1.24e-05
Smp_033260.1 Smp_212510.1 -0.91 1.23e-06 6.19e-05
Smp_036780.1 Smp_212510.1 -0.90 2.52e-06 1.00e-04
Smp_212510.1 Smp_037530.1 -0.91 2.26e-06 9.47e-05
Smp_038870.2 Smp_212510.1 -0.95 2.46e-08 4.17e-06
Smp_212510.1 Smp_039970.1 -0.93 4.93e-07 3.25e-05
Smp_212510.1 Smp_045950.1 0.93 3.68e-07 2.65e-05
Smp_050350.3 Smp_212510.1 -0.90 3.87e-06 1.00e-04
Smp_212510.1 Smp_050760.1 -0.90 4.71e-06 1.00e-04
Smp_212510.1 Smp_053830.1 0.92 5.20e-07 3.37e-05
Smp_212510.1 Smp_054750.1 0.93 3.91e-07 2.77e-05
Smp_212510.1 Smp_055630.1 -0.90 3.76e-06 1.00e-04
Smp_212510.1 Smp_055900.1 -0.93 3.76e-07 2.70e-05
Smp_212510.1 Smp_056460.1 -0.91 2.22e-06 9.38e-05
Smp_058170.1 Smp_212510.1 0.90 3.26e-06 1.00e-04
Smp_212510.1 Smp_058190.1 -0.91 2.51e-06 1.00e-04
Smp_061590.1 Smp_212510.1 0.93 3.95e-07 2.79e-05
Smp_212510.1 Smp_062720.1 0.93 3.59e-07 2.61e-05
Smp_212510.1 Smp_064590.1 0.90 3.44e-06 1.00e-04
Smp_068920.3 Smp_212510.1 0.97 2.13e-09 8.29e-07
Smp_212510.1 Smp_071640.1 0.96 1.00e-08 2.28e-06
Smp_212510.1 Smp_074190.1 -0.90 4.86e-06 1.00e-04
Smp_212510.1 Smp_074900.1 -0.90 3.44e-06 1.00e-04
Smp_212510.1 Smp_078550.1 0.91 1.62e-06 7.50e-05
Smp_212510.1 Smp_079420.1 -0.91 1.39e-06 6.74e-05
Smp_212510.1 Smp_080280.1 0.91 1.59e-06 7.42e-05
Smp_212510.1 Smp_086600.1 0.92 5.57e-07 3.54e-05
Smp_212510.1 Smp_092990.1 -0.91 1.97e-06 8.60e-05
Smp_212510.1 Smp_099810.1 0.96 1.04e-08 2.34e-06
Smp_212510.1 Smp_103000.1 -0.91 2.06e-06 8.90e-05
Smp_212510.1 Smp_109300.1 0.92 8.51e-07 4.76e-05
Smp_110280.1 Smp_212510.1 0.90 2.91e-06 1.00e-04
Smp_212510.1 Smp_111710.1 0.92 8.23e-07 4.65e-05
Smp_212510.1 Smp_122830.1 0.98 3.87e-11 6.41e-08
Smp_125020.1 Smp_212510.1 -0.91 2.26e-06 9.50e-05
Smp_212510.1 Smp_126850.1 0.90 3.12e-06 1.00e-04
Smp_212510.1 Smp_131790.1 -0.91 2.00e-06 8.71e-05
Smp_132160.1 Smp_212510.1 0.95 5.52e-08 7.22e-06
Smp_136620.1 Smp_212510.1 -0.90 3.21e-06 1.00e-04
Smp_212510.1 Smp_136700.1 -0.91 2.25e-06 9.45e-05
Smp_212510.1 Smp_137000.2 -0.91 1.75e-06 7.94e-05
Smp_212510.1 Smp_137330.1 0.95 1.66e-08 3.20e-06
Smp_212510.1 Smp_137840.1 -0.91 1.54e-06 7.24e-05
Smp_137960.1 Smp_212510.1 -0.90 2.69e-06 1.00e-04
Smp_212510.1 Smp_140610.1 -0.90 3.67e-06 1.00e-04
Smp_212510.1 Smp_141020.1 0.96 7.56e-09 1.89e-06
Smp_146460.1 Smp_212510.1 -0.90 2.70e-06 1.00e-04
Smp_149820.1 Smp_212510.1 -0.90 3.86e-06 1.00e-04
Smp_212510.1 Smp_152970.1 -0.91 1.51e-06 7.16e-05
Smp_212510.1 Smp_153300.1 -0.90 3.67e-06 1.00e-04
Smp_154640.1 Smp_212510.1 0.91 1.61e-06 7.47e-05
Smp_212510.1 Smp_155610.1 -0.91 1.88e-06 8.35e-05
Smp_212510.1 Smp_155960.1 0.94 1.20e-07 1.22e-05
Smp_212510.1 Smp_157750.1 0.91 1.25e-06 6.24e-05
Smp_212510.1 Smp_159730.2 0.92 1.02e-06 5.42e-05
Smp_160000.1 Smp_212510.1 0.95 4.69e-08 6.46e-06
Smp_212510.1 Smp_160010.1 -0.90 4.00e-06 1.00e-04
Smp_212510.1 Smp_166500.2 -0.90 3.47e-06 1.00e-04
Smp_212510.1 Smp_170370.1 -0.93 1.94e-07 1.70e-05
Smp_212510.1 Smp_173660.1 -0.91 1.22e-06 6.14e-05
Smp_177900.1 Smp_212510.1 0.97 5.74e-10 3.57e-07
Smp_212510.1 Smp_180440.1 -0.90 2.78e-06 1.00e-04
Smp_212510.1 Smp_181060.1 -0.90 2.85e-06 1.00e-04
Smp_212510.1 Smp_184180.1 0.96 3.69e-09 1.18e-06
Smp_194860.1 Smp_212510.1 -0.90 2.62e-06 1.00e-04
Smp_212510.1 Smp_196480.1 -0.91 1.36e-06 6.63e-05
Smp_212510.1 Smp_198470.1 -0.90 3.50e-06 1.00e-04
Smp_198650.1 Smp_212510.1 0.91 2.05e-06 8.85e-05
Smp_212510.1 Smp_201030.1 -0.90 4.08e-06 1.00e-04
Smp_212510.1 Smp_201240.1 0.91 1.37e-06 6.66e-05
Smp_212510.1 Smp_202340.1 0.92 7.65e-07 4.42e-05
Smp_212510.1 Smp_203780.1 -0.90 4.13e-06 1.00e-04
Smp_212510.1 Smp_204940.1 0.90 4.62e-06 1.00e-04
Smp_212510.1 Smp_205060.1 0.90 3.90e-06 1.00e-04
Smp_210190.1 Smp_212510.1 -0.90 3.86e-06 1.00e-04
Smp_212510.1 Smp_212100.1 0.93 4.92e-07 3.25e-05
Smp_212510.1 Smp_900100.1 -0.91 2.28e-06 9.56e-05