Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_212430.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
Smp_212430.1 0 1.72 5.10 5.71 7.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212430.1 SmLINC00001-IBu 0.81 2.00e-04 2.40e-03
Smp_212430.1 SmLINC00004-IBu 0.84 6.05e-05 9.00e-04
Smp_212430.1 SmLINC00007-IBu 0.80 2.00e-04 2.80e-03
Smp_212430.1 SmLINC01520-IBu 0.89 8.69e-06 2.00e-04
Smp_212430.1 SmLINC02029-IBu 0.90 2.83e-06 1.00e-04
Smp_212430.1 SmLINC02376-IBu 0.82 1.00e-04 1.70e-03
Smp_212430.1 SmLINC02539-IBu 0.85 4.13e-05 7.00e-04
Smp_212430.1 SmLINC02545-IBu 0.87 2.04e-05 4.00e-04
Smp_212430.1 SmLINC02577-IBu 0.86 2.63e-05 5.00e-04
Smp_212430.1 SmLINC02783-IBu 0.84 7.40e-05 1.10e-03
Smp_212430.1 SmLINC02786-IBu 0.89 5.04e-06 1.00e-04
Smp_212430.1 SmLINC03658-IBu 0.89 6.20e-06 1.00e-04
Smp_212430.1 SmLINC04235-IBu 0.89 5.13e-06 1.00e-04
Smp_212430.1 SmLINC04421-IBu 0.82 1.00e-04 1.80e-03
Smp_212430.1 SmLINC04423-IBu 0.80 2.00e-04 2.70e-03
Smp_212430.1 SmLINC04896-IBu 0.95 2.17e-08 3.61e-06
Smp_212430.1 SmLINC05404-IBu 0.94 9.20e-08 9.69e-06
Smp_212430.1 SmLINC05604-IBu 0.89 7.60e-06 2.00e-04
Smp_212430.1 SmLINC05684-IBu 0.89 7.86e-06 2.00e-04
Smp_212430.1 SmLINC06239-IBu 0.85 4.44e-05 7.00e-04
Smp_212430.1 SmLINC06415-IBu 0.81 1.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_212430.1 0 1.72 5.10 5.71 7.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212430.1 Smp_037720.1 0.90 2.60e-06 1.00e-04
Smp_041540.1 Smp_212430.1 0.92 6.71e-07 4.03e-05
Smp_212430.1 Smp_070540.1 0.90 2.55e-06 1.00e-04
Smp_089270.1 Smp_212430.1 0.91 1.78e-06 8.01e-05
Smp_140720.1 Smp_212430.1 0.92 9.50e-07 5.14e-05
Smp_152150.1 Smp_212430.1 0.91 1.72e-06 7.82e-05
Smp_164400.1 Smp_212430.1 0.91 2.43e-06 1.00e-04
Smp_212430.1 Smp_167830.1 0.91 1.75e-06 7.92e-05
Smp_170840.1 Smp_212430.1 0.92 9.41e-07 5.11e-05