Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_212350.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_212350.1 0 1.51 0.94 -3.08 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212350.1 SmLINC04271-IBu 0.7 3.20e-03 1.50e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_212350.1 0 1.51 0.94 -3.08 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212350.1 SmLINC00787-IBu 0.81 2.00e-04 2.70e-03
Smp_212350.1 SmLINC01429-IBu 0.92 1.14e-06 5.64e-05
Smp_212350.1 SmLINC01979-IBu 0.97 4.90e-10 2.97e-07
Smp_212350.1 SmLINC02646-IBu 0.90 2.52e-06 9.91e-05
Smp_212350.1 SmLINC03111-IBu 0.90 3.70e-06 1.00e-04
Smp_212350.1 SmLINC03116-IBu 0.86 2.72e-05 5.00e-04
Smp_212350.1 SmLINC03395-IBu 0.80 3.00e-04 3.20e-03
Smp_212350.1 SmLINC03443-IBu 0.87 1.62e-05 3.00e-04
Smp_212350.1 SmLINC04074-IBu 0.86 3.65e-05 6.00e-04
Smp_212350.1 SmLINC06436-IBu 0.80 3.00e-04 3.20e-03
Smp_212350.1 SmLINC06646-IBu 0.90 4.55e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_212350.1 0 1.51 0.94 -3.08 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193700.1 Smp_212350.1 0.90 3.58e-06 1.00e-04
Smp_193990.1 Smp_212350.1 0.93 3.36e-07 2.49e-05