Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_212290.1 Data

Correlation between Smp_212290.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_212290.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_212290.1 SmLINC00282-IBu 0.81 2.00e-04 2.50e-03
Smp_212290.1 SmLINC00554-IBu 0.87 2.29e-05 4.00e-04
Smp_212290.1 SmLINC00556-IBu 0.83 1.00e-04 1.40e-03
Smp_212290.1 SmLINC02255-IBu 0.87 2.23e-05 4.00e-04
Smp_212290.1 SmLINC02630-IBu 0.82 1.00e-04 1.70e-03
Smp_212290.1 SmLINC02657-IBu 0.85 4.29e-05 7.00e-04
Smp_212290.1 SmLINC02888-IBu 0.86 3.45e-05 6.00e-04
Smp_212290.1 SmLINC05284-IBu 0.81 2.00e-04 2.70e-03
Smp_212290.1 SmLINC05989-IBu 0.83 1.00e-04 1.60e-03
Smp_212290.1 SmLINC06128-IBu 0.89 5.79e-06 1.00e-04
Smp_212290.1 SmLINC06535-IBu 0.87 1.67e-05 3.00e-04
Smp_212290.1 SmLINC06903-IBu 0.83 1.00e-04 1.60e-03

Correlation between Smp_212290.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 Smp_212290.1 0.90 2.65e-06 1.00e-04
Smp_212290.1 Smp_035090.2 0.90 3.40e-06 1.00e-04
Smp_212290.1 Smp_051230.4 0.90 4.13e-06 1.00e-04
Smp_109240.1 Smp_212290.1 0.91 1.35e-06 6.59e-05
Smp_212290.1 Smp_168080.2 0.93 2.44e-07 2.00e-05
Smp_188900.1 Smp_212290.1 0.92 9.07e-07 4.98e-05
Smp_212290.1 Smp_195070.1 0.96 1.25e-08 2.66e-06