Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_207040.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_207040.1 0 2.72 0.67 3.99 5.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_207040.1 SmLINC00001-IBu 0.94 6.75e-08 7.83e-06
Smp_207040.1 SmLINC00004-IBu 0.94 9.84e-08 1.01e-05
Smp_207040.1 SmLINC00007-IBu 0.84 6.04e-05 9.00e-04
Smp_207040.1 SmLINC00266-IBu 0.82 1.00e-04 2.00e-03
Smp_207040.1 SmLINC00369-IBu 0.85 4.50e-05 7.00e-04
Smp_207040.1 SmLINC00376-IBu 0.89 5.68e-06 1.00e-04
Smp_207040.1 SmLINC00525-IBu 0.86 2.60e-05 5.00e-04
Smp_207040.1 SmLINC01084-IBu 0.87 1.71e-05 3.00e-04
Smp_207040.1 SmLINC01431-IBu 0.89 8.40e-06 2.00e-04
Smp_207040.1 SmLINC01520-IBu 0.88 9.66e-06 2.00e-04
Smp_207040.1 SmLINC02029-IBu 0.84 7.52e-05 1.10e-03
Smp_207040.1 SmLINC02084-IBu 0.88 1.45e-05 3.00e-04
Smp_207040.1 SmLINC02255-IBu -0.82 1.00e-04 1.70e-03
Smp_207040.1 SmLINC02376-IBu 0.86 2.65e-05 5.00e-04
Smp_207040.1 SmLINC02394-IBu 0.91 1.60e-06 7.19e-05
Smp_207040.1 SmLINC02539-IBu 0.91 1.37e-06 6.44e-05
Smp_207040.1 SmLINC02540-IBu 0.89 8.60e-06 2.00e-04
Smp_207040.1 SmLINC02545-IBu 0.82 1.00e-04 2.10e-03
Smp_207040.1 SmLINC02546-IBu 0.83 1.00e-04 1.60e-03
Smp_207040.1 SmLINC02577-IBu 0.90 4.40e-06 1.00e-04
Smp_207040.1 SmLINC02630-IBu -0.82 1.00e-04 1.70e-03
Smp_207040.1 SmLINC02783-IBu 0.84 7.01e-05 1.00e-03
Smp_207040.1 SmLINC03108-IBu 0.82 1.00e-04 1.80e-03
Smp_207040.1 SmLINC03326-IBu 0.92 7.94e-07 4.35e-05
Smp_207040.1 SmLINC03927-IBu 0.82 1.00e-04 1.70e-03
Smp_207040.1 SmLINC04235-IBu 0.87 1.78e-05 4.00e-04
Smp_207040.1 SmLINC04421-IBu 0.93 3.96e-07 2.67e-05
Smp_207040.1 SmLINC04423-IBu 0.86 3.06e-05 5.00e-04
Smp_207040.1 SmLINC04627-IBu 0.81 2.00e-04 2.60e-03
Smp_207040.1 SmLINC05289-IBu 0.91 1.48e-06 6.78e-05
Smp_207040.1 SmLINC05404-IBu 0.81 2.00e-04 2.70e-03
Smp_207040.1 SmLINC05604-IBu 0.92 9.57e-07 4.97e-05
Smp_207040.1 SmLINC05684-IBu 0.85 4.68e-05 8.00e-04
Smp_207040.1 SmLINC06024-IBu 0.85 5.40e-05 9.00e-04
Smp_207040.1 SmLINC06145-IBu 0.82 1.00e-04 2.10e-03
Smp_207040.1 SmLINC06490-IBu -0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_116800.1 0 -1.63 -2.12 -11.49 -11.49
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_207040.1 0 2.72 0.67 3.99 5.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 Smp_207040.1 0.91 1.33e-06 6.54e-05
Smp_024180.2 Smp_207040.1 0.91 2.17e-06 9.21e-05
Smp_207040.1 Smp_028870.1 0.92 8.08e-07 4.59e-05
Smp_033260.1 Smp_207040.1 0.92 7.52e-07 4.37e-05
Smp_050350.3 Smp_207040.1 0.94 1.23e-07 1.25e-05
Smp_207040.1 Smp_056460.1 0.92 8.22e-07 4.64e-05
Smp_207040.1 Smp_079420.1 0.90 2.98e-06 1.00e-04
Smp_083430.1 Smp_207040.1 0.92 6.60e-07 3.99e-05
Smp_085180.1 Smp_207040.1 0.90 2.63e-06 1.00e-04
Smp_207040.1 Smp_102780.1 0.92 8.47e-07 4.74e-05
Smp_116800.1 Smp_207040.1 -0.90 3.62e-06 1.00e-04
Smp_207040.1 Smp_123880.1 0.91 2.44e-06 1.00e-04
Smp_207040.1 Smp_130100.1 0.90 3.47e-06 1.00e-04
Smp_207040.1 Smp_131410.1 0.91 2.18e-06 9.24e-05
Smp_207040.1 Smp_131490.1 0.92 1.12e-06 5.79e-05
Smp_207040.1 Smp_137000.2 0.91 1.83e-06 8.17e-05
Smp_207040.1 Smp_137810.1 0.96 5.24e-09 1.49e-06
Smp_207040.1 Smp_140720.1 0.92 7.70e-07 4.44e-05
Smp_207040.1 Smp_155570.1 0.95 4.96e-08 6.72e-06
Smp_159650.1 Smp_207040.1 0.91 2.28e-06 9.55e-05
Smp_207040.1 Smp_164320.1 0.91 1.81e-06 8.11e-05
Smp_207040.1 Smp_192780.1 0.93 4.21e-07 2.92e-05
Smp_196830.1 Smp_207040.1 0.91 1.78e-06 8.03e-05
Smp_207040.1 Smp_202610.1 0.94 1.16e-07 1.20e-05
Smp_207040.1 Smp_203030.1 0.92 7.75e-07 4.46e-05