Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_206300.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_206300.1 0 2.22 0.64 -3.00 -2.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206300.1 SmLINC00787-IBu 0.94 1.00e-07 1.03e-05
Smp_206300.1 SmLINC01230-IBu 0.93 4.99e-07 3.14e-05
Smp_206300.1 SmLINC01429-IBu 0.93 3.20e-07 2.30e-05
Smp_206300.1 SmLINC01979-IBu 0.91 1.77e-06 7.73e-05
Smp_206300.1 SmLINC03111-IBu 0.87 2.15e-05 4.00e-04
Smp_206300.1 SmLINC03116-IBu 0.92 5.34e-07 3.29e-05
Smp_206300.1 SmLINC04144-IBu 0.84 6.41e-05 1.00e-03
Smp_206300.1 SmLINC04693-IBu 0.89 6.89e-06 2.00e-04
Smp_206300.1 SmLINC06436-IBu 0.84 6.66e-05 1.00e-03
Smp_206300.1 SmLINC06667-IBu 0.86 2.65e-05 5.00e-04