Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_206250.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206250.1 SmLINC00294-IBu 0.83 1.00e-04 1.40e-03
Smp_206250.1 SmLINC00525-IBu -0.83 9.32e-05 1.30e-03
Smp_206250.1 SmLINC00556-IBu 0.83 1.00e-04 1.60e-03
Smp_206250.1 SmLINC01084-IBu -0.85 4.45e-05 7.00e-04
Smp_206250.1 SmLINC03485-IBu 0.84 6.89e-05 1.00e-03
Smp_206250.1 SmLINC03486-IBu 0.81 1.00e-04 2.20e-03
Smp_206250.1 SmLINC03849-IBu 0.96 5.18e-09 1.37e-06
Smp_206250.1 SmLINC06024-IBu -0.83 1.00e-04 1.40e-03
Smp_206250.1 SmLINC06535-IBu 0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04304-IBu 0 -0.11 -2.48 -4.50 -4.86
SmLINC05029-IBu 0 -0.52 -1.09 -3.55 -7.59
SmLINC05297-IBu 0 -0.00 -1.64 -3.66 -7.01
SmLINC05969-IBu 0 -0.28 -0.93 -11.78 -11.78
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_053760.1 0 0.29 -0.47 -5.24 -5.60
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206250.1 SmLINC03849-IBu 0.96 5.18e-09 1.47e-06
Smp_206250.1 SmLINC04304-IBu 0.91 1.32e-06 6.51e-05
Smp_206250.1 SmLINC05029-IBu 0.94 1.51e-07 1.44e-05
Smp_206250.1 SmLINC05297-IBu 0.92 8.32e-07 4.69e-05
Smp_206250.1 SmLINC05969-IBu 0.93 2.23e-07 1.88e-05
Smp_048260.1 Smp_206250.1 0.90 4.80e-06 1.00e-04
Smp_053760.1 Smp_206250.1 0.95 3.93e-08 5.73e-06
Smp_206250.1 Smp_126440.1 0.96 5.94e-09 1.62e-06
Smp_203840.1 Smp_206250.1 0.92 6.04e-07 3.74e-05