Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_206220.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
Smp_206220.1 0 -0.43 0.06 -4.82 -3.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206220.1 SmLINC01084-IBu -0.81 1.00e-04 2.20e-03
Smp_206220.1 SmLINC01431-IBu -0.80 3.00e-04 3.10e-03
Smp_206220.1 SmLINC02630-IBu 0.80 2.00e-04 2.90e-03
Smp_206220.1 SmLINC03849-IBu 0.82 1.00e-04 2.00e-03
Smp_206220.1 SmLINC04421-IBu -0.81 2.00e-04 2.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13
Smp_206220.1 0 -0.43 0.06 -4.82 -3.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206220.1 Smp_206090.1 0.91 1.74e-06 7.91e-05