Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_206200.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206200.1 SmLINC02657-IBu 0.80 3.00e-04 3.40e-03
Smp_206200.1 SmLINC03769-IBu 0.91 2.00e-06 8.42e-05
Smp_206200.1 SmLINC04957-IBu 0.92 6.94e-07 3.96e-05
Smp_206200.1 SmLINC05989-IBu 0.88 1.31e-05 3.00e-04
Smp_206200.1 SmLINC06128-IBu 0.88 9.11e-06 2.00e-04
Smp_206200.1 SmLINC06890-IBu 0.96 2.61e-09 8.79e-07
Smp_206200.1 SmLINC06903-IBu 0.98 5.34e-12 1.69e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC02325-IBu 0 -1.21 -1.93 -6.00 -7.20
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05923-IBu 0 -1.03 -3.25 -9.59 -7.30
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_050830.1 0 -1.69 -2.62 -4.49 -4.19
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_114220.1 0 -0.84 -2.09 -5.04 -6.34
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_161000.2 0 -1.02 -2.38 -7.73 -8.46
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_213910.1 0 -1.33 -3.68 -2.65 -4.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206200.1 SmLINC00093-IBu 0.90 2.94e-06 1.00e-04
Smp_206200.1 SmLINC00298-IBu 0.93 2.97e-07 2.29e-05
Smp_206200.1 SmLINC00568-IBu 0.97 3.49e-10 2.60e-07
Smp_206200.1 SmLINC01234-IBu 0.94 1.19e-07 1.22e-05
Smp_206200.1 SmLINC02325-IBu 0.90 3.45e-06 1.00e-04
Smp_206200.1 SmLINC03574-IBu 0.95 1.46e-08 2.95e-06
Smp_206200.1 SmLINC03769-IBu 0.91 2.00e-06 8.72e-05
Smp_206200.1 SmLINC04957-IBu 0.92 6.94e-07 4.12e-05
Smp_206200.1 SmLINC05923-IBu 0.90 3.86e-06 1.00e-04
Smp_206200.1 SmLINC06890-IBu 0.96 2.61e-09 9.45e-07
Smp_206200.1 SmLINC06903-IBu 0.98 5.34e-12 1.87e-08
Smp_206200.1 Smp_002510.1 0.91 1.32e-06 6.50e-05
Smp_206200.1 Smp_005880.1 0.98 2.61e-12 1.19e-08
Smp_206200.1 Smp_009650.1 0.97 3.11e-10 2.41e-07
Smp_010000.1 Smp_206200.1 0.97 3.28e-10 2.50e-07
Smp_206200.1 Smp_016730.1 0.91 1.87e-06 8.31e-05
Smp_206200.1 Smp_020550.1 0.91 2.20e-06 9.30e-05
Smp_030500.1 Smp_206200.1 0.90 3.65e-06 1.00e-04
Smp_032980.1 Smp_206200.1 0.91 1.44e-06 6.90e-05
Smp_034940.3 Smp_206200.1 0.91 2.04e-06 8.83e-05
Smp_206200.1 Smp_035090.2 0.92 9.26e-07 5.05e-05
Smp_206200.1 Smp_038100.1 0.94 1.07e-07 1.13e-05
Smp_206200.1 Smp_038530.1 0.92 7.87e-07 4.50e-05
Smp_206200.1 Smp_038730.10 0.90 3.01e-06 1.00e-04
Smp_206200.1 Smp_042160.2 0.94 1.75e-07 1.59e-05
Smp_043670.2 Smp_206200.1 0.90 4.25e-06 1.00e-04
Smp_206200.1 Smp_046800.2 0.91 1.43e-06 6.88e-05
Smp_206200.1 Smp_046930.1 0.91 2.06e-06 8.90e-05
Smp_206200.1 Smp_050830.1 0.93 3.80e-07 2.71e-05
Smp_063090.1 Smp_206200.1 0.94 1.52e-07 1.44e-05
Smp_206200.1 Smp_072110.1 0.90 3.40e-06 1.00e-04
Smp_206200.1 Smp_076010.1 0.98 7.74e-11 9.92e-08
Smp_206200.1 Smp_079220.1 0.90 2.60e-06 1.00e-04
Smp_206200.1 Smp_079920.1 0.92 5.50e-07 3.51e-05
Smp_206200.1 Smp_079970.1 0.93 3.43e-07 2.53e-05
Smp_206200.1 Smp_083340.1 0.92 1.02e-06 5.41e-05
Smp_206200.1 Smp_083720.1 0.94 1.14e-07 1.18e-05
Smp_206200.1 Smp_087250.1 0.94 7.11e-08 8.57e-06
Smp_206200.1 Smp_088610.1 0.95 3.87e-08 5.68e-06
Smp_206200.1 Smp_092320.1 0.94 9.45e-08 1.04e-05
Smp_206200.1 Smp_099680.1 0.90 3.43e-06 1.00e-04
Smp_206200.1 Smp_111320.1 0.94 7.98e-08 9.27e-06
Smp_206200.1 Smp_114220.1 0.91 2.29e-06 9.58e-05
Smp_206200.1 Smp_124340.1 0.94 1.12e-07 1.17e-05
Smp_206200.1 Smp_125090.1 0.91 1.57e-06 7.35e-05
Smp_129610.1 Smp_206200.1 0.91 2.17e-06 9.21e-05
Smp_206200.1 Smp_134410.1 0.90 4.68e-06 1.00e-04
Smp_206200.1 Smp_137520.1 0.93 4.26e-07 2.94e-05
Smp_206200.1 Smp_140270.1 0.92 1.02e-06 5.41e-05
Smp_206200.1 Smp_141630.1 0.92 6.82e-07 4.07e-05
Smp_206200.1 Smp_152780.1 0.90 3.69e-06 1.00e-04
Smp_206200.1 Smp_153600.1 0.95 2.35e-08 4.05e-06
Smp_206200.1 Smp_159600.1 0.97 8.16e-10 4.47e-07
Smp_206200.1 Smp_161000.2 0.91 1.22e-06 6.14e-05
Smp_206200.1 Smp_174560.1 0.95 4.32e-08 6.12e-06
Smp_206200.1 Smp_175190.1 0.91 2.50e-06 1.00e-04
Smp_206200.1 Smp_178530.1 0.96 2.78e-09 9.85e-07
Smp_206200.1 Smp_178620.1 0.93 2.16e-07 1.84e-05
Smp_206200.1 Smp_178630.1 0.94 6.78e-08 8.30e-06
Smp_206200.1 Smp_182890.1 0.93 4.10e-07 2.86e-05
Smp_206200.1 Smp_186130.1 0.92 1.04e-06 5.51e-05
Smp_206200.1 Smp_187350.1 0.95 3.19e-08 4.98e-06
Smp_206200.1 Smp_192890.1 0.90 2.79e-06 1.00e-04
Smp_206200.1 Smp_194770.1 0.95 4.53e-08 6.32e-06
Smp_206200.1 Smp_195140.1 0.94 8.09e-08 9.36e-06
Smp_206200.1 Smp_195160.1 0.90 3.39e-06 1.00e-04
Smp_206200.1 Smp_196050.1 0.95 5.74e-08 7.42e-06
Smp_206200.1 Smp_198950.1 0.97 1.29e-09 6.02e-07
Smp_206200.1 Smp_200320.1 0.92 6.48e-07 3.94e-05
Smp_206200.1 Smp_204770.1 0.95 5.18e-08 6.92e-06
Smp_206200.1 Smp_205550.1 0.90 3.15e-06 1.00e-04
Smp_206200.1 Smp_205860.1 0.94 1.56e-07 1.47e-05
Smp_206200.1 Smp_213910.1 0.96 2.83e-09 9.97e-07