Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_206150.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206150.1 SmLINC02678-IBu 0.81 2.00e-04 2.70e-03
Smp_206150.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_206150.1 SmLINC06128-IBu 0.89 6.07e-06 1.00e-04
Smp_206150.1 SmLINC06892-IBu 0.89 7.29e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190190.1 0 -1.71 -0.81 -9.39 -9.39
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206150.1 SmLINC05095-IBu 0.90 3.37e-06 1.00e-04
Smp_206150.1 Smp_002930.1 0.93 4.55e-07 3.07e-05
Smp_206150.1 Smp_005860.1 0.93 4.42e-07 3.02e-05
Smp_206150.1 Smp_005860.3 0.97 6.45e-10 3.84e-07
Smp_206150.1 Smp_006560.1 0.90 4.68e-06 1.00e-04
Smp_206150.1 Smp_022430.1 0.91 1.33e-06 6.52e-05
Smp_206150.1 Smp_032990.1 0.96 3.13e-09 1.06e-06
Smp_206150.1 Smp_033610.1 0.93 3.75e-07 2.69e-05
Smp_206150.1 Smp_038560.6 0.92 9.35e-07 5.08e-05
Smp_042160.1 Smp_206150.1 0.93 2.06e-07 1.78e-05
Smp_206150.1 Smp_061580.1 0.93 3.88e-07 2.75e-05
Smp_206150.1 Smp_061870.1 0.90 2.67e-06 1.00e-04
Smp_206150.1 Smp_061940.1 0.96 7.80e-09 1.93e-06
Smp_206150.1 Smp_065580.1 0.94 8.34e-08 9.56e-06
Smp_206150.1 Smp_066010.1 0.92 9.88e-07 5.29e-05
Smp_206150.1 Smp_074570.1 0.93 2.38e-07 1.96e-05
Smp_206150.1 Smp_077690.1 0.91 1.99e-06 8.69e-05
Smp_206150.1 Smp_084400.4 0.90 3.82e-06 1.00e-04
Smp_206150.1 Smp_085290.3 0.94 1.92e-07 1.69e-05
Smp_097750.1 Smp_206150.1 0.91 1.75e-06 7.94e-05
Smp_099420.1 Smp_206150.1 0.92 1.14e-06 5.88e-05
Smp_206150.1 Smp_102670.1 0.92 5.91e-07 3.69e-05
Smp_206150.1 Smp_105610.1 0.93 4.15e-07 2.89e-05
Smp_206150.1 Smp_108050.1 0.90 2.61e-06 1.00e-04
Smp_206150.1 Smp_110400.3 0.96 9.04e-09 2.13e-06
Smp_206150.1 Smp_113710.1 0.90 2.90e-06 1.00e-04
Smp_206150.1 Smp_113760.1 0.95 2.62e-08 4.36e-06
Smp_206150.1 Smp_133310.1 0.94 9.00e-08 1.00e-05
Smp_206150.1 Smp_133770.1 0.91 2.43e-06 9.99e-05
Smp_206150.1 Smp_140680.2 0.91 1.24e-06 6.24e-05
Smp_206150.1 Smp_145340.1 0.93 4.06e-07 2.84e-05
Smp_206150.1 Smp_145710.1 0.94 1.01e-07 1.09e-05
Smp_206150.1 Smp_145810.2 0.90 4.60e-06 1.00e-04
Smp_206150.1 Smp_154020.1 0.90 3.11e-06 1.00e-04
Smp_206150.1 Smp_167350.1 0.94 1.58e-07 1.48e-05
Smp_168380.1 Smp_206150.1 0.92 1.12e-06 5.80e-05
Smp_206150.1 Smp_169190.1 0.91 1.22e-06 6.14e-05
Smp_206150.1 Smp_178240.1 0.90 3.99e-06 1.00e-04
Smp_206150.1 Smp_179460.1 0.95 1.81e-08 3.40e-06
Smp_206150.1 Smp_179640.1 0.93 4.06e-07 2.84e-05
Smp_206150.1 Smp_182770.1 0.93 2.24e-07 1.88e-05
Smp_183020.1 Smp_206150.1 0.91 1.91e-06 8.42e-05
Smp_206150.1 Smp_183020.6 0.91 1.91e-06 8.42e-05
Smp_206150.1 Smp_183420.1 0.93 4.06e-07 2.84e-05
Smp_206150.1 Smp_184460.1 0.96 3.53e-09 1.15e-06
Smp_185180.1 Smp_206150.1 0.92 7.62e-07 4.41e-05
Smp_206150.1 Smp_185350.1 0.93 2.80e-07 2.20e-05
Smp_206150.1 Smp_185360.1 0.96 1.41e-08 2.88e-06
Smp_206150.1 Smp_186610.1 0.94 1.01e-07 1.09e-05
Smp_206150.1 Smp_188600.1 0.95 2.68e-08 4.43e-06
Smp_206150.1 Smp_188900.1 0.90 2.81e-06 1.00e-04
Smp_190190.1 Smp_206150.1 0.94 8.00e-08 9.29e-06
Smp_190320.1 Smp_206150.1 0.96 6.94e-09 1.79e-06
Smp_192880.1 Smp_206150.1 0.91 1.92e-06 8.47e-05
Smp_206150.1 Smp_194040.1 0.91 1.82e-06 8.16e-05
Smp_206150.1 Smp_199840.1 0.97 8.29e-10 4.52e-07
Smp_206150.1 Smp_202140.1 0.96 9.86e-09 2.26e-06
Smp_202700.1 Smp_206150.1 0.91 2.46e-06 1.00e-04
Smp_206150.1 Smp_205900.1 0.93 4.69e-07 3.14e-05
Smp_206150.1 Smp_206130.1 0.96 7.22e-09 1.84e-06