Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_206130.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206130.1 SmLINC02888-IBu 0.84 7.95e-05 1.10e-03
Smp_206130.1 SmLINC04957-IBu 0.80 3.00e-04 3.30e-03
Smp_206130.1 SmLINC06128-IBu 0.89 6.90e-06 2.00e-04
Smp_206130.1 SmLINC06892-IBu 0.80 3.00e-04 3.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206130.1 Smp_032990.1 0.93 3.84e-07 2.74e-05
Smp_206130.1 Smp_085290.3 0.91 2.18e-06 9.25e-05
Smp_102670.1 Smp_206130.1 0.92 6.70e-07 4.02e-05
Smp_109240.1 Smp_206130.1 0.90 3.36e-06 1.00e-04
Smp_116760.1 Smp_206130.1 0.93 2.95e-07 2.28e-05
Smp_206130.1 Smp_169190.1 0.93 2.27e-07 1.90e-05
Smp_183020.1 Smp_206130.1 0.92 7.41e-07 4.32e-05
Smp_206130.1 Smp_183020.6 0.92 7.41e-07 4.32e-05
Smp_206130.1 Smp_185350.1 0.94 7.41e-08 8.82e-06
Smp_206130.1 Smp_185360.1 0.91 2.50e-06 1.00e-04
Smp_206150.1 Smp_206130.1 0.96 7.22e-09 1.84e-06