Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_205970.1 Data

Correlation between Smp_205970.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_205970.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205970.1 SmLINC02039-IBu 0.94 9.09e-08 9.60e-06
Smp_205970.1 SmLINC02678-IBu 0.81 2.00e-04 2.50e-03
Smp_205970.1 SmLINC05989-IBu 0.85 4.59e-05 8.00e-04

Correlation between Smp_205970.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_044280.2 0 -10.78 -4.06 -10.78 -10.78
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_205970.1 0.98 3.27e-12 1.37e-08
Smp_205970.1 Smp_018880.1 0.90 3.43e-06 1.00e-04
Smp_205970.1 Smp_035270.1 0.95 3.77e-08 5.58e-06
Smp_205970.1 Smp_044280.2 0.93 2.14e-07 1.82e-05
Smp_205970.1 Smp_058360.2 0.90 2.57e-06 1.00e-04
Smp_205970.1 Smp_071380.2 0.91 1.54e-06 7.23e-05
Smp_106390.1 Smp_205970.1 0.92 5.39e-07 3.46e-05
Smp_205970.1 Smp_178240.1 0.90 3.77e-06 1.00e-04