Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205920.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
Smp_205920.1 0 2.95 2.42 4.90 4.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205920.1 SmLINC00376-IBu 0.83 1.00e-04 1.40e-03
Smp_205920.1 SmLINC01171-IBu 0.86 2.57e-05 5.00e-04
Smp_205920.1 SmLINC02581-IBu 0.84 7.04e-05 1.00e-03
Smp_205920.1 SmLINC03236-IBu 0.87 1.66e-05 3.00e-04
Smp_205920.1 SmLINC03693-IBu 0.82 1.00e-04 1.80e-03
Smp_205920.1 SmLINC04481-IBu 0.83 1.00e-04 1.40e-03
Smp_205920.1 SmLINC05009-IBu 0.80 3.00e-04 3.10e-03
Smp_205920.1 SmLINC05632-IBu 0.84 6.51e-05 1.00e-03
Smp_205920.1 SmLINC05990-IBu 0.93 2.02e-07 1.67e-05
Smp_205920.1 SmLINC06010-IBu 0.84 8.50e-05 1.20e-03
Smp_205920.1 SmLINC06221-IBu 0.83 9.68e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_071380.3 0 11.07 11.55 12.98 12.17
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_205920.1 0 2.95 2.42 4.90 4.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071380.3 Smp_205920.1 0.94 1.72e-07 1.57e-05
Smp_083990.2 Smp_205920.1 0.90 4.45e-06 1.00e-04