Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205860.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205860.1 SmLINC02038-IBu 0.83 1.00e-04 1.50e-03
Smp_205860.1 SmLINC03769-IBu 0.88 9.42e-06 2.00e-04
Smp_205860.1 SmLINC04957-IBu 0.80 2.00e-04 2.90e-03
Smp_205860.1 SmLINC06890-IBu 0.94 6.54e-08 7.67e-06
Smp_205860.1 SmLINC06903-IBu 0.93 4.49e-07 2.91e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
SmLINC06714-IBu 0 -0.14 -3.28 -3.40 -3.90
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_203080.1 0 -0.76 -1.73 -8.70 -6.32
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_213910.1 0 -1.33 -3.68 -2.65 -4.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205860.1 SmLINC00093-IBu 0.98 1.44e-10 1.47e-07
Smp_205860.1 SmLINC00298-IBu 0.92 5.18e-07 3.36e-05
Smp_205860.1 SmLINC00568-IBu 0.98 2.37e-11 4.73e-08
Smp_205860.1 SmLINC01675-IBu 0.93 2.87e-07 2.23e-05
Smp_205860.1 SmLINC03574-IBu 0.92 7.01e-07 4.16e-05
Smp_205860.1 SmLINC06714-IBu 0.92 6.25e-07 3.84e-05
Smp_205860.1 SmLINC06890-IBu 0.94 6.54e-08 8.11e-06
Smp_205860.1 SmLINC06903-IBu 0.93 4.49e-07 3.05e-05
Smp_205860.1 Smp_005880.1 0.93 4.02e-07 2.82e-05
Smp_205860.1 Smp_009310.4 0.93 4.68e-07 3.13e-05
Smp_205860.1 Smp_009650.1 0.90 2.97e-06 1.00e-04
Smp_010000.1 Smp_205860.1 0.95 4.80e-08 6.57e-06
Smp_205860.1 Smp_014670.1 0.90 3.80e-06 1.00e-04
Smp_205860.1 Smp_028990.3 0.96 1.28e-08 2.70e-06
Smp_205860.1 Smp_031000.1 0.90 3.13e-06 1.00e-04
Smp_205860.1 Smp_034420.1 0.95 3.38e-08 5.18e-06
Smp_043670.2 Smp_205860.1 0.93 3.29e-07 2.46e-05
Smp_205860.1 Smp_046800.2 0.91 1.24e-06 6.21e-05
Smp_205860.1 Smp_080920.3 0.93 4.13e-07 2.88e-05
Smp_205860.1 Smp_088610.1 0.90 3.26e-06 1.00e-04
Smp_205860.1 Smp_096020.1 0.96 7.01e-09 1.80e-06
Smp_205860.1 Smp_111320.1 0.97 1.83e-09 7.52e-07
Smp_205860.1 Smp_124340.1 0.92 6.02e-07 3.74e-05
Smp_205860.1 Smp_140270.1 0.90 4.69e-06 1.00e-04
Smp_159600.1 Smp_205860.1 0.90 4.02e-06 1.00e-04
Smp_205860.1 Smp_170800.1 0.92 6.75e-07 4.05e-05
Smp_205860.1 Smp_178630.1 0.96 4.92e-09 1.42e-06
Smp_205860.1 Smp_182890.1 0.96 6.88e-09 1.78e-06
Smp_205860.1 Smp_186130.1 0.91 2.41e-06 9.92e-05
Smp_205860.1 Smp_188880.1 0.91 2.10e-06 9.01e-05
Smp_192890.1 Smp_205860.1 0.92 1.11e-06 5.74e-05
Smp_198950.1 Smp_205860.1 0.92 1.19e-06 6.06e-05
Smp_200320.1 Smp_205860.1 0.93 2.42e-07 1.98e-05
Smp_205860.1 Smp_203080.1 0.91 1.47e-06 7.01e-05
Smp_205860.1 Smp_205550.1 0.93 2.50e-07 2.03e-05
Smp_206200.1 Smp_205860.1 0.94 1.56e-07 1.47e-05
Smp_205860.1 Smp_213910.1 0.92 6.42e-07 3.91e-05