Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205840.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_205840.1 0 0.97 0.46 -4.31 -2.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205840.1 SmLINC00026-IBu 0.84 6.74e-05 1.00e-03
Smp_205840.1 SmLINC00294-IBu 0.89 5.57e-06 1.00e-04
Smp_205840.1 SmLINC00893-IBu 0.85 5.03e-05 8.00e-04
Smp_205840.1 SmLINC01462-IBu 0.83 9.94e-05 1.40e-03
Smp_205840.1 SmLINC01486-IBu 0.81 2.00e-04 2.70e-03
Smp_205840.1 SmLINC03111-IBu 0.82 1.00e-04 1.70e-03
Smp_205840.1 SmLINC03395-IBu 0.89 6.62e-06 1.00e-04
Smp_205840.1 SmLINC03406-IBu 0.80 3.00e-04 3.30e-03
Smp_205840.1 SmLINC03443-IBu 0.82 1.00e-04 2.00e-03
Smp_205840.1 SmLINC03486-IBu 0.87 1.53e-05 3.00e-04
Smp_205840.1 SmLINC03849-IBu 0.84 8.48e-05 1.20e-03
Smp_205840.1 SmLINC04074-IBu 0.83 1.00e-04 1.50e-03
Smp_205840.1 SmLINC04075-IBu 0.87 2.11e-05 4.00e-04
Smp_205840.1 SmLINC04129-IBu 0.81 2.00e-04 2.70e-03
Smp_205840.1 SmLINC04271-IBu 0.84 7.71e-05 1.10e-03
Smp_205840.1 SmLINC05887-IBu 0.80 3.00e-04 3.20e-03
Smp_205840.1 SmLINC05888-IBu 0.80 2.00e-04 2.80e-03
Smp_205840.1 SmLINC06489-IBu 0.85 4.20e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_205840.1 0 0.97 0.46 -4.31 -2.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205840.1 Smp_205330.1 0.9 4.26e-06 1.00e-04