Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_205550.1 Data

Correlation between Smp_205550.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_205550.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205550.1 SmLINC04957-IBu 0.83 1.00e-04 1.40e-03
Smp_205550.1 SmLINC05274-IBu 0.82 1.00e-04 1.90e-03
Smp_205550.1 SmLINC06890-IBu 0.92 7.40e-07 4.14e-05
Smp_205550.1 SmLINC06903-IBu 0.86 2.79e-05 5.00e-04

Correlation between Smp_205550.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205550.1 Smp_007270.2 0.94 1.14e-07 1.18e-05
Smp_205550.1 Smp_028990.3 0.93 4.40e-07 3.01e-05
Smp_043670.2 Smp_205550.1 0.96 2.34e-09 8.82e-07
Smp_096020.1 Smp_205550.1 0.92 1.19e-06 6.04e-05
Smp_182890.1 Smp_205550.1 0.95 3.00e-08 4.77e-06
Smp_205550.1 Smp_186130.1 0.97 3.81e-10 2.75e-07
Smp_192890.1 Smp_205550.1 0.91 1.23e-06 6.19e-05
Smp_205860.1 Smp_205550.1 0.93 2.50e-07 2.03e-05
Smp_206200.1 Smp_205550.1 0.90 3.15e-06 1.00e-04