Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205520.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_205520.1 0 0.47 -0.17 -3.17 -3.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205520.1 SmLINC00026-IBu 0.81 2.00e-04 2.70e-03
Smp_205520.1 SmLINC00037-IBu 0.88 1.30e-05 3.00e-04
Smp_205520.1 SmLINC00133-IBu 0.89 5.24e-06 1.00e-04
Smp_205520.1 SmLINC00282-IBu 0.86 3.53e-05 6.00e-04
Smp_205520.1 SmLINC00294-IBu 0.88 1.12e-05 2.00e-04
Smp_205520.1 SmLINC00893-IBu 0.86 3.83e-05 7.00e-04
Smp_205520.1 SmLINC01462-IBu 0.88 1.34e-05 3.00e-04
Smp_205520.1 SmLINC01486-IBu 0.89 6.62e-06 1.00e-04
Smp_205520.1 SmLINC01637-IBu 0.84 8.00e-05 1.20e-03
Smp_205520.1 SmLINC03056-IBu 0.81 2.00e-04 2.60e-03
Smp_205520.1 SmLINC03849-IBu 0.91 2.02e-06 8.47e-05
Smp_205520.1 SmLINC03930-IBu 0.88 9.52e-06 2.00e-04
Smp_205520.1 SmLINC04075-IBu 0.89 7.60e-06 2.00e-04
Smp_205520.1 SmLINC04178-IBu 0.83 1.00e-04 1.50e-03
Smp_205520.1 SmLINC04271-IBu 0.85 4.72e-05 8.00e-04
Smp_205520.1 SmLINC04366-IBu 0.80 2.00e-04 2.90e-03
Smp_205520.1 SmLINC05716-IBu 0.88 8.99e-06 2.00e-04
Smp_205520.1 SmLINC05720-IBu 0.83 1.00e-04 1.40e-03
Smp_205520.1 SmLINC06535-IBu 0.84 8.59e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_203800.1 0 0.03 -0.31 -15.15 -10.99
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_205520.1 0 0.47 -0.17 -3.17 -3.98
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203800.1 Smp_205520.1 0.93 4.69e-07 3.14e-05
Smp_204360.1 Smp_205520.1 0.90 3.95e-06 1.00e-04
Smp_205330.1 Smp_205520.1 0.92 1.17e-06 5.98e-05
Smp_206090.1 Smp_205520.1 0.91 2.11e-06 9.03e-05