Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205510.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_205510.1 0 -1.83 -1.83 4.36 5.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205510.1 SmLINC00369-IBu 0.80 2.00e-04 2.90e-03
Smp_205510.1 SmLINC01122-IBu 0.82 1.00e-04 1.70e-03
Smp_205510.1 SmLINC01569-IBu 0.80 2.00e-04 3.00e-03
Smp_205510.1 SmLINC01733-IBu 0.83 1.00e-04 1.40e-03
Smp_205510.1 SmLINC04423-IBu 0.83 1.00e-04 1.50e-03
Smp_205510.1 SmLINC04478-IBu 0.86 3.79e-05 6.00e-04
Smp_205510.1 SmLINC04521-IBu 0.87 1.55e-05 3.00e-04
Smp_205510.1 SmLINC05289-IBu 0.80 2.00e-04 2.70e-03
Smp_205510.1 SmLINC06024-IBu 0.82 1.00e-04 1.90e-03
Smp_205510.1 SmLINC06145-IBu 0.87 1.85e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_205510.1 0 -1.83 -1.83 4.36 5.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205510.1 Smp_024180.1 0.95 2.34e-08 4.03e-06
Smp_024180.2 Smp_205510.1 0.93 3.87e-07 2.75e-05
Smp_090140.1 Smp_205510.1 0.92 5.37e-07 3.45e-05
Smp_205510.1 Smp_201910.1 0.90 3.92e-06 1.00e-04