Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205330.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205330.1 SmLINC00037-IBu 0.89 7.44e-06 2.00e-04
Smp_205330.1 SmLINC00133-IBu 0.91 1.82e-06 7.86e-05
Smp_205330.1 SmLINC00282-IBu 0.86 3.79e-05 6.00e-04
Smp_205330.1 SmLINC00294-IBu 0.88 8.85e-06 2.00e-04
Smp_205330.1 SmLINC00893-IBu 0.86 3.31e-05 6.00e-04
Smp_205330.1 SmLINC01462-IBu 0.87 1.72e-05 3.00e-04
Smp_205330.1 SmLINC01486-IBu 0.90 2.76e-06 1.00e-04
Smp_205330.1 SmLINC01637-IBu 0.83 1.00e-04 1.40e-03
Smp_205330.1 SmLINC02038-IBu 0.81 2.00e-04 2.40e-03
Smp_205330.1 SmLINC03362-IBu 0.80 3.00e-04 3.30e-03
Smp_205330.1 SmLINC03849-IBu 0.83 1.00e-04 1.40e-03
Smp_205330.1 SmLINC03930-IBu 0.89 8.41e-06 2.00e-04
Smp_205330.1 SmLINC04075-IBu 0.94 1.07e-07 1.08e-05
Smp_205330.1 SmLINC04178-IBu 0.81 2.00e-04 2.40e-03
Smp_205330.1 SmLINC04271-IBu 0.81 1.00e-04 2.30e-03
Smp_205330.1 SmLINC04940-IBu 0.83 1.00e-04 1.40e-03
Smp_205330.1 SmLINC05716-IBu 0.84 6.97e-05 1.00e-03
Smp_205330.1 SmLINC06535-IBu 0.83 9.69e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC01180-IBu 0 1.55 -0.77 -3.45 -4.34
SmLINC01290-IBu 0 0.99 -0.58 -10.77 -6.13
SmLINC01398-IBu 0 0.59 -1.71 -4.36 -11.17
SmLINC01420-IBu 0 0.03 -0.94 -8.33 -5.60
SmLINC01459-IBu 0 0.54 -1.00 -3.24 -4.18
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01639-IBu 0 0.14 -1.17 -10.44 -3.39
SmLINC01705-IBu 0 0.21 -2.02 -4.88 -6.15
SmLINC02195-IBu 0 0.99 -1.15 -6.76 -6.76
SmLINC02334-IBu 0 0.29 -1.21 -3.45 -5.81
SmLINC02609-IBu 0 0.63 -2.31 -10.45 -10.45
SmLINC03063-IBu 0 0.35 -1.04 -3.81 -4.86
SmLINC03228-IBu 0 1.09 -2.89 -4.45 -6.58
SmLINC03667-IBu 0 0.11 -1.85 -4.78 -4.31
SmLINC03716-IBu 0 0.96 -1.59 -3.29 -5.50
SmLINC04063-IBu 0 -0.15 -1.46 -3.86 -5.16
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04108-IBu 0 -0.24 -0.89 -7.24 -4.10
SmLINC04273-IBu 0 0.09 -1.29 -4.54 -6.15
SmLINC04438-IBu 0 1.31 -8.54 -8.54 -8.54
SmLINC05749-IBu 0 0.17 -1.59 -4.81 -5.79
SmLINC06117-IBu 0 0.50 -1.42 -6.03 -9.04
SmLINC06126-IBu 0 0.23 -2.31 -5.95 -6.63
SmLINC06336-IBu 0 0.18 -1.19 -3.28 -4.48
SmLINC06577-IBu 0 -0.27 -1.16 -4.93 -5.29
SmLINC06610-IBu 0 -0.00 -1.33 -3.85 -4.79
Smp_000380.1 0 -0.32 -2.14 -6.41 -7.59
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09
Smp_008390.1 0 0.53 -0.79 -6.20 -6.20
Smp_113550.1 0 0.10 -1.71 -6.16 -6.16
Smp_129290.1 0 -0.51 -1.30 -6.92 -4.90
Smp_130700.1 0 0.19 -1.83 -3.63 -3.85
Smp_134770.1 0 0.04 -2.01 -4.85 -7.07
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_158010.1 0 0.21 -0.51 -5.78 -5.78
Smp_201410.1 0 0.26 -6.26 -6.26 -6.26
Smp_202580.1 0 1.24 0.71 -2.72 -5.55
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_205480.1 0 0.40 -2.39 -9.52 -9.52
Smp_205520.1 0 0.47 -0.17 -3.17 -3.98
Smp_205840.1 0 0.97 0.46 -4.31 -2.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205330.1 SmLINC00133-IBu 0.91 1.82e-06 8.14e-05
Smp_205330.1 SmLINC01180-IBu 0.92 9.23e-07 5.04e-05
Smp_205330.1 SmLINC01290-IBu 0.90 3.43e-06 1.00e-04
Smp_205330.1 SmLINC01398-IBu 0.93 2.85e-07 2.22e-05
Smp_205330.1 SmLINC01420-IBu 0.90 4.16e-06 1.00e-04
Smp_205330.1 SmLINC01459-IBu 0.92 5.69e-07 3.59e-05
Smp_205330.1 SmLINC01486-IBu 0.90 2.76e-06 1.00e-04
Smp_205330.1 SmLINC01639-IBu 0.93 2.70e-07 2.14e-05
Smp_205330.1 SmLINC01705-IBu 0.90 4.21e-06 1.00e-04
Smp_205330.1 SmLINC02195-IBu 0.95 5.95e-08 7.59e-06
Smp_205330.1 SmLINC02334-IBu 0.91 1.98e-06 8.65e-05
Smp_205330.1 SmLINC02609-IBu 0.90 3.36e-06 1.00e-04
Smp_205330.1 SmLINC03063-IBu 0.92 1.03e-06 5.46e-05
Smp_205330.1 SmLINC03228-IBu 0.91 1.67e-06 7.66e-05
Smp_205330.1 SmLINC03667-IBu 0.91 1.88e-06 8.34e-05
Smp_205330.1 SmLINC03716-IBu 0.91 2.08e-06 8.94e-05
Smp_205330.1 SmLINC04063-IBu 0.93 2.58e-07 2.08e-05
Smp_205330.1 SmLINC04075-IBu 0.94 1.07e-07 1.13e-05
Smp_205330.1 SmLINC04108-IBu 0.92 7.55e-07 4.38e-05
Smp_205330.1 SmLINC04273-IBu 0.91 2.20e-06 9.32e-05
Smp_205330.1 SmLINC04438-IBu 0.90 2.75e-06 1.00e-04
Smp_205330.1 SmLINC05749-IBu 0.92 9.85e-07 5.28e-05
Smp_205330.1 SmLINC06117-IBu 0.93 3.71e-07 2.67e-05
Smp_205330.1 SmLINC06126-IBu 0.90 3.67e-06 1.00e-04
Smp_205330.1 SmLINC06336-IBu 0.90 3.93e-06 1.00e-04
Smp_205330.1 SmLINC06577-IBu 0.90 4.58e-06 1.00e-04
Smp_205330.1 SmLINC06610-IBu 0.90 4.78e-06 1.00e-04
Smp_000380.1 Smp_205330.1 0.90 2.72e-06 1.00e-04
Smp_205330.1 Smp_006960.1 0.92 1.12e-06 5.79e-05
Smp_008390.1 Smp_205330.1 0.90 3.70e-06 1.00e-04
Smp_205330.1 Smp_113550.1 0.92 5.54e-07 3.52e-05
Smp_129290.1 Smp_205330.1 0.93 3.05e-07 2.33e-05
Smp_130700.1 Smp_205330.1 0.90 3.55e-06 1.00e-04
Smp_134770.1 Smp_205330.1 0.93 3.23e-07 2.42e-05
Smp_142260.1 Smp_205330.1 0.90 3.28e-06 1.00e-04
Smp_158010.1 Smp_205330.1 0.92 9.11e-07 4.99e-05
Smp_201410.1 Smp_205330.1 0.93 2.53e-07 2.05e-05
Smp_205330.1 Smp_202580.1 0.93 4.59e-07 3.09e-05
Smp_204360.1 Smp_205330.1 0.90 3.50e-06 1.00e-04
Smp_205480.1 Smp_205330.1 0.91 1.24e-06 6.22e-05
Smp_205330.1 Smp_205520.1 0.92 1.17e-06 5.98e-05
Smp_205840.1 Smp_205330.1 0.90 4.26e-06 1.00e-04