Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205220.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_205220.1 0 2.68 1.94 -1.09 -2.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205220.1 SmLINC00026-IBu 0.94 1.55e-07 1.39e-05
Smp_205220.1 SmLINC00294-IBu 0.81 2.00e-04 2.30e-03
Smp_205220.1 SmLINC00787-IBu 0.80 3.00e-04 3.10e-03
Smp_205220.1 SmLINC00893-IBu 0.89 7.71e-06 2.00e-04
Smp_205220.1 SmLINC01429-IBu 0.87 1.54e-05 3.00e-04
Smp_205220.1 SmLINC01462-IBu 0.83 1.00e-04 1.40e-03
Smp_205220.1 SmLINC01979-IBu 0.84 7.43e-05 1.10e-03
Smp_205220.1 SmLINC03056-IBu 0.83 9.00e-05 1.30e-03
Smp_205220.1 SmLINC03111-IBu 0.87 1.78e-05 4.00e-04
Smp_205220.1 SmLINC03116-IBu 0.87 1.80e-05 4.00e-04
Smp_205220.1 SmLINC03395-IBu 0.89 6.74e-06 2.00e-04
Smp_205220.1 SmLINC03406-IBu 0.80 2.00e-04 2.90e-03
Smp_205220.1 SmLINC03443-IBu 0.95 2.50e-08 3.97e-06
Smp_205220.1 SmLINC04074-IBu 0.84 8.87e-05 1.20e-03
Smp_205220.1 SmLINC04106-IBu 0.90 3.67e-06 1.00e-04
Smp_205220.1 SmLINC04129-IBu 0.92 8.26e-07 4.48e-05
Smp_205220.1 SmLINC04144-IBu 0.87 1.84e-05 4.00e-04
Smp_205220.1 SmLINC04178-IBu 0.84 7.61e-05 1.10e-03
Smp_205220.1 SmLINC04271-IBu 0.91 1.77e-06 7.70e-05
Smp_205220.1 SmLINC05178-IBu 0.94 1.00e-07 1.03e-05
Smp_205220.1 SmLINC05840-IBu 0.93 3.62e-07 2.51e-05
Smp_205220.1 SmLINC05887-IBu 0.93 2.10e-07 1.72e-05
Smp_205220.1 SmLINC05888-IBu 0.88 1.03e-05 2.00e-04
Smp_205220.1 SmLINC06138-IBu 0.93 3.71e-07 2.55e-05
Smp_205220.1 SmLINC06436-IBu 0.92 1.02e-06 5.21e-05
Smp_205220.1 SmLINC06669-IBu 0.86 3.15e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_205220.1 0 2.68 1.94 -1.09 -2.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205220.1 Smp_193700.1 0.92 6.18e-07 3.81e-05
Smp_205220.1 Smp_193990.1 0.92 1.04e-06 5.49e-05