Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205080.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205080.1 SmLINC00556-IBu 0.81 2.00e-04 2.40e-03
Smp_205080.1 SmLINC02255-IBu 0.81 2.00e-04 2.60e-03
Smp_205080.1 SmLINC02630-IBu 0.80 2.00e-04 2.80e-03
Smp_205080.1 SmLINC02678-IBu 0.83 9.54e-05 1.30e-03
Smp_205080.1 SmLINC02888-IBu 0.88 1.00e-05 2.00e-04
Smp_205080.1 SmLINC06128-IBu 0.82 1.00e-04 1.70e-03
Smp_205080.1 SmLINC06892-IBu 0.89 5.05e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205080.1 Smp_055220.2 0.90 4.74e-06 1.00e-04
Smp_106390.1 Smp_205080.1 0.92 7.75e-07 4.46e-05
Smp_145810.2 Smp_205080.1 0.90 4.25e-06 1.00e-04
Smp_149670.1 Smp_205080.1 0.92 8.75e-07 4.85e-05
Smp_150690.2 Smp_205080.1 0.90 2.58e-06 1.00e-04
Smp_205080.1 Smp_184460.1 0.91 1.22e-06 6.16e-05
Smp_205080.1 Smp_185360.1 0.91 1.79e-06 8.05e-05