Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_205060.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205060.1 SmLINC00372-IBu 0.81 2.00e-04 2.50e-03
Smp_205060.1 SmLINC01316-IBu 0.83 1.00e-04 1.60e-03
Smp_205060.1 SmLINC06489-IBu 0.85 3.93e-05 7.00e-04
Smp_205060.1 SmLINC06490-IBu 0.90 3.37e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00
Smp_080280.1 0 -0.42 -0.06 -4.59 -4.87
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_200840.1 0 0.23 -0.00 -8.20 -7.06
Smp_205050.1 0 0.07 1.73 -5.83 -8.52
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_205060.1 SmLINC04259-IBu 0.90 4.28e-06 1.00e-04
Smp_205060.1 SmLINC06490-IBu 0.90 3.37e-06 1.00e-04
Smp_205060.1 SmLINC07016-IBu 0.92 9.11e-07 4.99e-05
Smp_205060.1 Smp_023140.1 0.91 1.38e-06 6.72e-05
Smp_205060.1 Smp_035640.1 0.91 2.44e-06 1.00e-04
Smp_205060.1 Smp_054750.1 0.90 4.08e-06 1.00e-04
Smp_205060.1 Smp_069160.2 0.93 4.95e-07 3.26e-05
Smp_205060.1 Smp_077820.1 0.91 2.35e-06 9.77e-05
Smp_080280.1 Smp_205060.1 0.90 3.43e-06 1.00e-04
Smp_090930.5 Smp_205060.1 0.90 4.65e-06 1.00e-04
Smp_106750.1 Smp_205060.1 0.90 2.83e-06 1.00e-04
Smp_205060.1 Smp_112930.1 0.92 7.99e-07 4.55e-05
Smp_205060.1 Smp_137330.1 0.93 3.35e-07 2.49e-05
Smp_205060.1 Smp_149220.1 0.93 4.87e-07 3.22e-05
Smp_205060.1 Smp_158680.1 0.90 3.07e-06 1.00e-04
Smp_205060.1 Smp_160670.1 0.90 3.58e-06 1.00e-04
Smp_205060.1 Smp_194110.1 0.92 6.45e-07 3.92e-05
Smp_200120.1 Smp_205060.1 0.93 5.11e-07 3.33e-05
Smp_200840.1 Smp_205060.1 0.92 5.51e-07 3.51e-05
Smp_205050.1 Smp_205060.1 0.90 2.83e-06 1.00e-04
Smp_212510.1 Smp_205060.1 0.90 3.90e-06 1.00e-04