Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_204830.1 0 1.96 1.08 -3.62 -2.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204830.1 SmLINC00026-IBu 0.81 2.00e-04 2.40e-03
Smp_204830.1 SmLINC01429-IBu 0.90 3.08e-06 1.00e-04
Smp_204830.1 SmLINC01979-IBu 0.92 7.84e-07 4.32e-05
Smp_204830.1 SmLINC03111-IBu 0.95 1.76e-08 3.13e-06
Smp_204830.1 SmLINC03116-IBu 0.88 9.32e-06 2.00e-04
Smp_204830.1 SmLINC03395-IBu 0.94 1.58e-07 1.41e-05
Smp_204830.1 SmLINC03443-IBu 0.93 3.39e-07 2.39e-05
Smp_204830.1 SmLINC03486-IBu 0.84 7.19e-05 1.10e-03
Smp_204830.1 SmLINC04074-IBu 0.97 8.28e-10 4.17e-07
Smp_204830.1 SmLINC04144-IBu 0.83 1.00e-04 1.60e-03
Smp_204830.1 SmLINC06436-IBu 0.84 8.43e-05 1.20e-03
Smp_204830.1 SmLINC06646-IBu 0.87 2.02e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_204830.1 0 1.96 1.08 -3.62 -2.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193990.1 Smp_204830.1 0.92 1.12e-06 5.79e-05