Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204810.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_204810.1 0 0.92 3.78 7.51 9.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204810.1 SmLINC00001-IBu 0.99 1.21e-12 6.71e-09
Smp_204810.1 SmLINC00004-IBu 0.95 3.52e-08 5.02e-06
Smp_204810.1 SmLINC00007-IBu 0.89 5.87e-06 1.00e-04
Smp_204810.1 SmLINC01084-IBu 0.81 1.00e-04 2.10e-03
Smp_204810.1 SmLINC01520-IBu 0.95 4.49e-08 5.93e-06
Smp_204810.1 SmLINC02029-IBu 0.91 1.51e-06 6.88e-05
Smp_204810.1 SmLINC02376-IBu 0.92 1.11e-06 5.54e-05
Smp_204810.1 SmLINC02394-IBu 0.94 8.49e-08 9.17e-06
Smp_204810.1 SmLINC02539-IBu 0.96 5.35e-09 1.40e-06
Smp_204810.1 SmLINC02540-IBu 0.94 9.32e-08 9.77e-06
Smp_204810.1 SmLINC02577-IBu 0.97 1.98e-09 7.33e-07
Smp_204810.1 SmLINC02776-IBu 0.85 4.15e-05 7.00e-04
Smp_204810.1 SmLINC02783-IBu 0.95 1.93e-08 3.34e-06
Smp_204810.1 SmLINC02786-IBu 0.85 4.53e-05 7.00e-04
Smp_204810.1 SmLINC03326-IBu 0.97 2.07e-09 7.57e-07
Smp_204810.1 SmLINC03658-IBu 0.87 1.93e-05 4.00e-04
Smp_204810.1 SmLINC04235-IBu 0.95 3.96e-08 5.44e-06
Smp_204810.1 SmLINC04237-IBu 0.91 2.44e-06 9.68e-05
Smp_204810.1 SmLINC04421-IBu 0.87 2.16e-05 4.00e-04
Smp_204810.1 SmLINC04423-IBu 0.82 1.00e-04 2.10e-03
Smp_204810.1 SmLINC04627-IBu 0.95 4.59e-08 6.02e-06
Smp_204810.1 SmLINC05289-IBu 0.93 2.25e-07 1.80e-05
Smp_204810.1 SmLINC05404-IBu 0.87 2.32e-05 4.00e-04
Smp_204810.1 SmLINC05604-IBu 0.91 1.95e-06 8.25e-05
Smp_204810.1 SmLINC05684-IBu 0.95 3.46e-08 4.96e-06
Smp_204810.1 SmLINC06024-IBu 0.83 1.00e-04 1.60e-03
Smp_204810.1 SmLINC06239-IBu 0.88 1.41e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_204810.1 0 0.92 3.78 7.51 9.44
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_204810.1 0.94 1.09e-07 1.15e-05
Smp_004780.3 Smp_204810.1 0.90 3.93e-06 1.00e-04
Smp_007950.1 Smp_204810.1 0.96 3.31e-09 1.10e-06
Smp_016490.2 Smp_204810.1 0.98 2.17e-12 1.06e-08
Smp_024180.2 Smp_204810.1 0.90 4.34e-06 1.00e-04
Smp_204810.1 Smp_028870.1 0.99 6.04e-15 2.89e-10
Smp_037720.1 Smp_204810.1 0.94 1.30e-07 1.30e-05
Smp_050350.3 Smp_204810.1 0.90 3.44e-06 1.00e-04
Smp_083430.1 Smp_204810.1 0.96 4.45e-09 1.34e-06
Smp_085180.1 Smp_204810.1 0.99 3.54e-14 8.61e-10
Smp_086450.3 Smp_204810.1 0.91 1.88e-06 8.34e-05
Smp_204810.1 Smp_102780.1 0.99 1.07e-13 1.68e-09
Smp_204810.1 Smp_105450.2 0.93 3.14e-07 2.38e-05
Smp_123880.1 Smp_204810.1 0.98 3.27e-11 5.79e-08
Smp_204810.1 Smp_130100.1 0.97 3.81e-10 2.74e-07
Smp_204810.1 Smp_131410.1 0.98 3.66e-11 6.21e-08
Smp_204810.1 Smp_131490.1 0.99 2.17e-14 6.35e-10
Smp_136730.1 Smp_204810.1 0.94 8.81e-08 9.92e-06
Smp_204810.1 Smp_137700.1 0.93 3.38e-07 2.50e-05
Smp_137720.1 Smp_204810.1 0.98 1.77e-11 3.92e-08
Smp_137810.1 Smp_204810.1 0.96 1.42e-08 2.89e-06
Smp_139160.1 Smp_204810.1 0.95 2.16e-08 3.82e-06
Smp_139240.1 Smp_204810.1 0.97 9.06e-10 4.78e-07
Smp_140720.1 Smp_204810.1 0.95 3.64e-08 5.45e-06
Smp_155570.1 Smp_204810.1 0.97 2.96e-10 2.34e-07
Smp_159650.1 Smp_204810.1 0.98 3.99e-12 1.56e-08
Smp_162320.1 Smp_204810.1 0.98 1.72e-11 3.85e-08
Smp_163700.1 Smp_204810.1 0.97 8.76e-10 4.68e-07
Smp_204810.1 Smp_164320.1 0.99 5.08e-13 4.35e-09
Smp_181070.1 Smp_204810.1 0.95 1.54e-08 3.05e-06
Smp_187140.1 Smp_204810.1 0.97 2.60e-10 2.15e-07
Smp_194380.1 Smp_204810.1 0.97 8.11e-10 4.45e-07
Smp_204810.1 Smp_194910.1 0.97 1.08e-09 5.35e-07
Smp_196830.1 Smp_204810.1 0.95 2.95e-08 4.72e-06
Smp_204810.1 Smp_202610.1 0.99 7.07e-13 5.35e-09
Smp_203030.1 Smp_204810.1 0.97 3.04e-10 2.38e-07
Smp_205580.1 Smp_204810.1 0.98 1.33e-10 1.40e-07