Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204720.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_204720.1 0 1.63 2.16 4.61 4.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204720.1 SmLINC00171-IBu 0.80 3.00e-04 3.10e-03
Smp_204720.1 SmLINC00376-IBu 0.86 3.03e-05 5.00e-04
Smp_204720.1 SmLINC00477-IBu 0.82 1.00e-04 1.70e-03
Smp_204720.1 SmLINC00548-IBu 0.84 6.25e-05 1.00e-03
Smp_204720.1 SmLINC01066-IBu 0.85 3.93e-05 7.00e-04
Smp_204720.1 SmLINC01139-IBu 0.81 1.00e-04 2.20e-03
Smp_204720.1 SmLINC01171-IBu 0.87 1.90e-05 4.00e-04
Smp_204720.1 SmLINC01231-IBu 0.80 3.00e-04 3.30e-03
Smp_204720.1 SmLINC01433-IBu 0.82 1.00e-04 1.90e-03
Smp_204720.1 SmLINC01435-IBu 0.84 7.34e-05 1.10e-03
Smp_204720.1 SmLINC01538-IBu 0.83 1.00e-04 1.50e-03
Smp_204720.1 SmLINC01733-IBu 0.81 1.00e-04 2.20e-03
Smp_204720.1 SmLINC01746-IBu 0.82 1.00e-04 1.70e-03
Smp_204720.1 SmLINC02084-IBu 0.81 2.00e-04 2.60e-03
Smp_204720.1 SmLINC02255-IBu -0.80 3.00e-04 3.20e-03
Smp_204720.1 SmLINC02546-IBu 0.80 2.00e-04 2.90e-03
Smp_204720.1 SmLINC02581-IBu 0.81 2.00e-04 2.60e-03
Smp_204720.1 SmLINC02630-IBu -0.80 2.00e-04 2.90e-03
Smp_204720.1 SmLINC03236-IBu 0.90 2.85e-06 1.00e-04
Smp_204720.1 SmLINC03309-IBu 0.84 6.27e-05 1.00e-03
Smp_204720.1 SmLINC03542-IBu 0.80 2.00e-04 2.80e-03
Smp_204720.1 SmLINC03693-IBu 0.90 4.52e-06 1.00e-04
Smp_204720.1 SmLINC04054-IBu 0.83 1.00e-04 1.60e-03
Smp_204720.1 SmLINC04345-IBu 0.81 2.00e-04 2.60e-03
Smp_204720.1 SmLINC04432-IBu 0.85 4.10e-05 7.00e-04
Smp_204720.1 SmLINC04475-IBu 0.89 8.74e-06 2.00e-04
Smp_204720.1 SmLINC04663-IBu 0.80 2.00e-04 2.80e-03
Smp_204720.1 SmLINC04684-IBu 0.88 1.44e-05 3.00e-04
Smp_204720.1 SmLINC05009-IBu 0.86 2.74e-05 5.00e-04
Smp_204720.1 SmLINC05171-IBu 0.83 1.00e-04 1.60e-03
Smp_204720.1 SmLINC05258-IBu 0.86 2.59e-05 5.00e-04
Smp_204720.1 SmLINC05632-IBu 0.83 9.96e-05 1.40e-03
Smp_204720.1 SmLINC05990-IBu 0.89 8.13e-06 2.00e-04
Smp_204720.1 SmLINC06010-IBu 0.88 1.44e-05 3.00e-04
Smp_204720.1 SmLINC06221-IBu 0.91 2.01e-06 8.42e-05
Smp_204720.1 SmLINC06418-IBu 0.83 1.00e-04 1.40e-03
Smp_204720.1 SmLINC06444-IBu 0.84 7.95e-05 1.10e-03
Smp_204720.1 SmLINC06449-IBu 0.83 1.00e-04 1.60e-03
Smp_204720.1 SmLINC06536-IBu 0.82 1.00e-04 1.70e-03
Smp_204720.1 SmLINC06543-IBu 0.86 3.89e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_071380.3 0 11.07 11.55 12.98 12.17
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_204720.1 0 1.63 2.16 4.61 4.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204720.1 Smp_020760.2 0.94 1.79e-07 1.61e-05
Smp_204720.1 Smp_055340.2 0.91 2.41e-06 9.93e-05
Smp_204720.1 Smp_071380.3 0.91 2.46e-06 1.00e-04
Smp_083990.2 Smp_204720.1 0.93 4.68e-07 3.13e-05