Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_204460.1 Data

Correlation between Smp_204460.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_204460.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_204460.1 0 1.62 -2.55 -6.93 -6.93

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204460.1 SmLINC00026-IBu 0.82 1.00e-04 1.80e-03
Smp_204460.1 SmLINC00037-IBu 0.91 1.69e-06 7.46e-05
Smp_204460.1 SmLINC00133-IBu 0.94 1.33e-07 1.25e-05
Smp_204460.1 SmLINC00282-IBu 0.89 7.44e-06 2.00e-04
Smp_204460.1 SmLINC00294-IBu 0.80 3.00e-04 3.10e-03
Smp_204460.1 SmLINC00784-IBu 0.86 2.92e-05 5.00e-04
Smp_204460.1 SmLINC00893-IBu 0.89 6.26e-06 1.00e-04
Smp_204460.1 SmLINC01462-IBu 0.89 5.24e-06 1.00e-04
Smp_204460.1 SmLINC01486-IBu 0.94 1.65e-07 1.45e-05
Smp_204460.1 SmLINC01637-IBu 0.84 6.34e-05 1.00e-03
Smp_204460.1 SmLINC03056-IBu 0.93 3.59e-07 2.49e-05
Smp_204460.1 SmLINC03362-IBu 0.96 2.77e-09 9.14e-07
Smp_204460.1 SmLINC03848-IBu 0.85 4.69e-05 8.00e-04
Smp_204460.1 SmLINC03930-IBu 0.89 6.72e-06 2.00e-04
Smp_204460.1 SmLINC04075-IBu 0.92 8.06e-07 4.40e-05
Smp_204460.1 SmLINC04106-IBu 0.88 1.51e-05 3.00e-04
Smp_204460.1 SmLINC04178-IBu 0.93 2.23e-07 1.79e-05
Smp_204460.1 SmLINC04271-IBu 0.83 9.44e-05 1.30e-03
Smp_204460.1 SmLINC04366-IBu 0.90 3.88e-06 1.00e-04
Smp_204460.1 SmLINC04940-IBu 0.93 2.89e-07 2.14e-05
Smp_204460.1 SmLINC05178-IBu 0.81 1.00e-04 2.20e-03
Smp_204460.1 SmLINC05716-IBu 0.90 3.34e-06 1.00e-04
Smp_204460.1 SmLINC05720-IBu 0.82 1.00e-04 2.00e-03
Smp_204460.1 SmLINC05887-IBu 0.87 2.39e-05 5.00e-04
Smp_204460.1 SmLINC05888-IBu 0.90 4.35e-06 1.00e-04
Smp_204460.1 SmLINC06138-IBu 0.82 1.00e-04 1.80e-03
Smp_204460.1 SmLINC06210-IBu 0.96 7.97e-09 1.83e-06
Smp_204460.1 SmLINC06669-IBu 0.83 8.95e-05 1.30e-03

Correlation between Smp_204460.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_204460.1 0 1.62 -2.55 -6.93 -6.93

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_204460.1 0.91 1.32e-06 6.50e-05
Smp_125070.1 Smp_204460.1 0.93 2.23e-07 1.87e-05
Smp_182090.1 Smp_204460.1 0.95 1.55e-08 3.06e-06
Smp_184710.1 Smp_204460.1 0.92 1.04e-06 5.50e-05
Smp_185680.1 Smp_204460.1 0.96 3.16e-09 1.07e-06
Smp_185830.1 Smp_204460.1 0.93 4.80e-07 3.19e-05
Smp_204360.1 Smp_204460.1 0.96 7.52e-09 1.89e-06