Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204390.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC05685-IBu 0 5.64 5.26 5.37 7.19
Smp_204390.1 0 1.69 0.93 3.73 4.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204390.1 SmLINC05684-IBu 0.81 1.00e-04 1.80e-03
Smp_204390.1 SmLINC05685-IBu 0.61 1.39e-02 4.42e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_204390.1 0 1.69 0.93 3.73 4.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204390.1 SmLINC00001-IBu 0.93 3.81e-07 2.60e-05
Smp_204390.1 SmLINC00004-IBu 0.92 7.28e-07 4.10e-05
Smp_204390.1 SmLINC00007-IBu 0.83 1.00e-04 1.40e-03
Smp_204390.1 SmLINC00266-IBu 0.83 1.00e-04 1.60e-03
Smp_204390.1 SmLINC00369-IBu 0.87 1.77e-05 4.00e-04
Smp_204390.1 SmLINC00376-IBu 0.91 1.68e-06 7.44e-05
Smp_204390.1 SmLINC00525-IBu 0.85 4.07e-05 7.00e-04
Smp_204390.1 SmLINC01084-IBu 0.88 1.35e-05 3.00e-04
Smp_204390.1 SmLINC01122-IBu 0.80 3.00e-04 3.20e-03
Smp_204390.1 SmLINC01431-IBu 0.89 7.21e-06 2.00e-04
Smp_204390.1 SmLINC01432-IBu 0.80 3.00e-04 3.30e-03
Smp_204390.1 SmLINC01520-IBu 0.85 5.68e-05 9.00e-04
Smp_204390.1 SmLINC02029-IBu 0.82 1.00e-04 2.10e-03
Smp_204390.1 SmLINC02084-IBu 0.88 1.18e-05 3.00e-04
Smp_204390.1 SmLINC02255-IBu -0.91 1.85e-06 7.95e-05
Smp_204390.1 SmLINC02376-IBu 0.82 1.00e-04 2.00e-03
Smp_204390.1 SmLINC02394-IBu 0.91 2.42e-06 9.62e-05
Smp_204390.1 SmLINC02539-IBu 0.89 7.30e-06 2.00e-04
Smp_204390.1 SmLINC02540-IBu 0.85 3.98e-05 7.00e-04
Smp_204390.1 SmLINC02545-IBu 0.81 2.00e-04 2.50e-03
Smp_204390.1 SmLINC02546-IBu 0.82 1.00e-04 2.00e-03
Smp_204390.1 SmLINC02577-IBu 0.86 3.17e-05 6.00e-04
Smp_204390.1 SmLINC02630-IBu -0.90 3.52e-06 1.00e-04
Smp_204390.1 SmLINC02657-IBu -0.86 2.65e-05 5.00e-04
Smp_204390.1 SmLINC02783-IBu 0.80 3.00e-04 3.20e-03
Smp_204390.1 SmLINC03108-IBu 0.81 2.00e-04 2.40e-03
Smp_204390.1 SmLINC03326-IBu 0.89 8.37e-06 2.00e-04
Smp_204390.1 SmLINC03927-IBu 0.83 9.53e-05 1.30e-03
Smp_204390.1 SmLINC04235-IBu 0.83 8.90e-05 1.20e-03
Smp_204390.1 SmLINC04421-IBu 0.94 1.92e-07 1.61e-05
Smp_204390.1 SmLINC04423-IBu 0.85 4.84e-05 8.00e-04
Smp_204390.1 SmLINC04521-IBu 0.80 2.00e-04 3.00e-03
Smp_204390.1 SmLINC05284-IBu -0.84 7.05e-05 1.00e-03
Smp_204390.1 SmLINC05289-IBu 0.91 1.30e-06 6.19e-05
Smp_204390.1 SmLINC05604-IBu 0.91 2.50e-06 9.84e-05
Smp_204390.1 SmLINC05684-IBu 0.81 1.00e-04 2.20e-03
Smp_204390.1 SmLINC06024-IBu 0.85 4.97e-05 8.00e-04
Smp_204390.1 SmLINC06145-IBu 0.81 1.00e-04 2.20e-03
Smp_204390.1 SmLINC06535-IBu -0.84 7.92e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_116800.1 0 -1.63 -2.12 -11.49 -11.49
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_204390.1 0 1.69 0.93 3.73 4.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204390.1 Smp_024180.2 0.91 2.15e-06 9.17e-05
Smp_204390.1 Smp_033260.1 0.92 5.92e-07 3.69e-05
Smp_204390.1 Smp_050350.3 0.95 3.79e-08 5.60e-06
Smp_204390.1 Smp_052280.2 0.92 9.82e-07 5.27e-05
Smp_204390.1 Smp_056460.1 0.92 5.82e-07 3.65e-05
Smp_204390.1 Smp_079420.1 0.92 8.44e-07 4.73e-05
Smp_204390.1 Smp_083430.1 0.90 4.08e-06 1.00e-04
Smp_204390.1 Smp_094050.1 0.90 3.33e-06 1.00e-04
Smp_116800.1 Smp_204390.1 -0.90 2.68e-06 1.00e-04
Smp_204390.1 Smp_137000.2 0.93 3.32e-07 2.47e-05
Smp_204390.1 Smp_137810.1 0.94 8.07e-08 9.35e-06
Smp_204390.1 Smp_140720.1 0.90 4.58e-06 1.00e-04
Smp_204390.1 Smp_155570.1 0.92 6.06e-07 3.75e-05
Smp_204390.1 Smp_192780.1 0.91 1.63e-06 7.53e-05
Smp_194860.1 Smp_204390.1 0.90 4.15e-06 1.00e-04
Smp_204390.1 Smp_202610.1 0.91 1.34e-06 6.56e-05