Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_204320.1 0 2.18 2.93 7.96 9.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204320.1 SmLINC00001-IBu 0.95 2.96e-08 4.46e-06
Smp_204320.1 SmLINC00004-IBu 0.92 9.50e-07 4.94e-05
Smp_204320.1 SmLINC00007-IBu 0.94 6.56e-08 7.68e-06
Smp_204320.1 SmLINC00266-IBu 0.86 2.56e-05 5.00e-04
Smp_204320.1 SmLINC00525-IBu 0.80 3.00e-04 3.10e-03
Smp_204320.1 SmLINC01084-IBu 0.80 2.00e-04 2.70e-03
Smp_204320.1 SmLINC01520-IBu 0.99 5.31e-13 4.02e-09
Smp_204320.1 SmLINC02029-IBu 0.92 5.30e-07 3.28e-05
Smp_204320.1 SmLINC02084-IBu 0.81 2.00e-04 2.60e-03
Smp_204320.1 SmLINC02376-IBu 0.88 1.13e-05 2.00e-04
Smp_204320.1 SmLINC02394-IBu 0.91 1.47e-06 6.75e-05
Smp_204320.1 SmLINC02539-IBu 0.98 9.68e-12 2.44e-08
Smp_204320.1 SmLINC02540-IBu 0.98 1.95e-12 8.99e-09
Smp_204320.1 SmLINC02577-IBu 0.99 1.11e-13 1.54e-09
Smp_204320.1 SmLINC02776-IBu 0.93 2.95e-07 2.17e-05
Smp_204320.1 SmLINC02783-IBu 0.97 1.95e-09 7.27e-07
Smp_204320.1 SmLINC02786-IBu 0.90 3.16e-06 1.00e-04
Smp_204320.1 SmLINC03326-IBu 0.96 1.28e-08 2.53e-06
Smp_204320.1 SmLINC03658-IBu 0.89 5.96e-06 1.00e-04
Smp_204320.1 SmLINC04235-IBu 0.91 2.18e-06 8.94e-05
Smp_204320.1 SmLINC04237-IBu 0.94 6.59e-08 7.70e-06
Smp_204320.1 SmLINC04421-IBu 0.87 1.82e-05 4.00e-04
Smp_204320.1 SmLINC04627-IBu 0.91 1.70e-06 7.48e-05
Smp_204320.1 SmLINC04896-IBu 0.80 2.00e-04 3.10e-03
Smp_204320.1 SmLINC05289-IBu 0.92 5.34e-07 3.29e-05
Smp_204320.1 SmLINC05404-IBu 0.89 7.56e-06 2.00e-04
Smp_204320.1 SmLINC05604-IBu 0.92 1.01e-06 5.17e-05
Smp_204320.1 SmLINC05684-IBu 0.96 5.03e-09 1.35e-06
Smp_204320.1 SmLINC06239-IBu 0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_204320.1 0 2.18 2.93 7.96 9.98
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_204320.1 0.90 4.31e-06 1.00e-04
Smp_007950.1 Smp_204320.1 0.99 1.34e-14 4.72e-10
Smp_016490.2 Smp_204320.1 0.96 4.11e-09 1.27e-06
Smp_204320.1 Smp_028870.1 0.96 5.09e-09 1.46e-06
Smp_037720.1 Smp_204320.1 0.98 8.71e-11 1.06e-07
Smp_041540.1 Smp_204320.1 0.90 2.68e-06 1.00e-04
Smp_070540.1 Smp_204320.1 0.94 1.64e-07 1.52e-05
Smp_083430.1 Smp_204320.1 0.98 2.01e-12 1.01e-08
Smp_085180.1 Smp_204320.1 0.97 1.37e-09 6.25e-07
Smp_102780.1 Smp_204320.1 0.97 8.07e-10 4.44e-07
Smp_105450.1 Smp_204320.1 0.92 8.24e-07 4.65e-05
Smp_105450.2 Smp_204320.1 0.94 1.16e-07 1.19e-05
Smp_123880.1 Smp_204320.1 0.99 9.92e-13 6.57e-09
Smp_126340.1 Smp_204320.1 0.92 9.77e-07 5.24e-05
Smp_130100.1 Smp_204320.1 0.95 2.44e-08 4.15e-06
Smp_204320.1 Smp_131410.1 0.99 4.43e-13 3.99e-09
Smp_131490.1 Smp_204320.1 0.94 7.70e-08 9.05e-06
Smp_136730.1 Smp_204320.1 0.97 1.75e-09 7.30e-07
Smp_137700.1 Smp_204320.1 0.90 4.32e-06 1.00e-04
Smp_137720.1 Smp_204320.1 0.96 9.22e-09 2.16e-06
Smp_137810.1 Smp_204320.1 0.97 5.92e-10 3.64e-07
Smp_139160.1 Smp_204320.1 0.94 8.53e-08 9.71e-06
Smp_139240.1 Smp_204320.1 0.98 1.91e-11 4.11e-08
Smp_140720.1 Smp_204320.1 0.95 2.54e-08 4.26e-06
Smp_155570.1 Smp_204320.1 0.96 2.87e-09 1.00e-06
Smp_159650.1 Smp_204320.1 0.93 3.17e-07 2.39e-05
Smp_162320.1 Smp_204320.1 0.96 2.69e-09 9.65e-07
Smp_163700.1 Smp_204320.1 0.98 3.54e-12 1.45e-08
Smp_164320.1 Smp_204320.1 0.98 3.98e-11 6.53e-08
Smp_181070.1 Smp_204320.1 0.95 3.69e-08 5.50e-06
Smp_187140.1 Smp_204320.1 0.98 3.31e-11 5.83e-08
Smp_194380.1 Smp_204320.1 0.99 2.42e-13 2.76e-09
Smp_204320.1 Smp_194910.1 0.97 1.34e-09 6.14e-07
Smp_196830.1 Smp_204320.1 0.99 2.48e-14 6.87e-10
Smp_202610.1 Smp_204320.1 0.97 7.06e-10 4.07e-07
Smp_203030.1 Smp_204320.1 0.95 2.23e-08 3.92e-06
Smp_205580.1 Smp_204320.1 0.97 4.63e-10 3.11e-07