Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204250.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_204250.1 0 5.52 0.00 5.50 7.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204250.1 SmLINC00001-IBu 0.86 2.62e-05 5.00e-04
Smp_204250.1 SmLINC00004-IBu 0.83 9.96e-05 1.40e-03
Smp_204250.1 SmLINC00007-IBu 0.84 7.93e-05 1.10e-03
Smp_204250.1 SmLINC01520-IBu 0.87 1.89e-05 4.00e-04
Smp_204250.1 SmLINC02029-IBu 0.90 4.26e-06 1.00e-04
Smp_204250.1 SmLINC02394-IBu 0.82 1.00e-04 2.00e-03
Smp_204250.1 SmLINC02539-IBu 0.88 1.44e-05 3.00e-04
Smp_204250.1 SmLINC02540-IBu 0.83 1.00e-04 1.40e-03
Smp_204250.1 SmLINC02577-IBu 0.87 2.03e-05 4.00e-04
Smp_204250.1 SmLINC02776-IBu 0.81 2.00e-04 2.70e-03
Smp_204250.1 SmLINC02783-IBu 0.85 4.38e-05 7.00e-04
Smp_204250.1 SmLINC02786-IBu 0.84 7.90e-05 1.10e-03
Smp_204250.1 SmLINC03326-IBu 0.83 1.00e-04 1.40e-03
Smp_204250.1 SmLINC03658-IBu 0.86 3.51e-05 6.00e-04
Smp_204250.1 SmLINC04235-IBu 0.87 2.00e-05 4.00e-04
Smp_204250.1 SmLINC04237-IBu 0.83 9.04e-05 1.30e-03
Smp_204250.1 SmLINC04627-IBu 0.88 1.18e-05 3.00e-04
Smp_204250.1 SmLINC05289-IBu 0.86 2.63e-05 5.00e-04
Smp_204250.1 SmLINC05604-IBu 0.85 5.79e-05 9.00e-04
Smp_204250.1 SmLINC05684-IBu 0.88 9.96e-06 2.00e-04
Smp_204250.1 SmLINC06239-IBu 0.83 1.00e-04 1.50e-03