Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204190.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_204190.1 0 3.21 -3.16 -0.75 1.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204190.1 SmLINC00026-IBu 0.83 1.00e-04 1.60e-03
Smp_204190.1 SmLINC00037-IBu 0.83 1.00e-04 1.60e-03
Smp_204190.1 SmLINC00133-IBu 0.86 3.73e-05 6.00e-04
Smp_204190.1 SmLINC00893-IBu 0.90 4.81e-06 1.00e-04
Smp_204190.1 SmLINC01462-IBu 0.84 6.97e-05 1.00e-03
Smp_204190.1 SmLINC01486-IBu 0.86 2.55e-05 5.00e-04
Smp_204190.1 SmLINC03056-IBu 0.89 6.92e-06 2.00e-04
Smp_204190.1 SmLINC03362-IBu 0.96 5.12e-09 1.36e-06
Smp_204190.1 SmLINC03406-IBu 0.83 9.72e-05 1.30e-03
Smp_204190.1 SmLINC04075-IBu 0.89 5.24e-06 1.00e-04
Smp_204190.1 SmLINC04106-IBu 0.83 1.00e-04 1.50e-03
Smp_204190.1 SmLINC04129-IBu 0.85 4.52e-05 7.00e-04
Smp_204190.1 SmLINC04178-IBu 0.95 1.48e-08 2.79e-06
Smp_204190.1 SmLINC04271-IBu 0.80 2.00e-04 3.00e-03
Smp_204190.1 SmLINC04940-IBu 0.99 9.22e-13 5.68e-09
Smp_204190.1 SmLINC05178-IBu 0.87 1.73e-05 3.00e-04
Smp_204190.1 SmLINC05840-IBu 0.83 1.00e-04 1.60e-03
Smp_204190.1 SmLINC05887-IBu 0.89 5.04e-06 1.00e-04
Smp_204190.1 SmLINC05888-IBu 0.95 5.28e-08 6.62e-06
Smp_204190.1 SmLINC06138-IBu 0.87 1.55e-05 3.00e-04
Smp_204190.1 SmLINC06210-IBu 0.94 9.80e-08 1.01e-05
Smp_204190.1 SmLINC06669-IBu 0.94 1.17e-07 1.14e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_204190.1 0 3.21 -3.16 -0.75 1.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204190.1 Smp_185680.1 0.91 2.47e-06 1.00e-04
Smp_185830.1 Smp_204190.1 0.92 5.49e-07 3.50e-05