Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_204050.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
Smp_204050.1 0 0.77 1.82 3.81 4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204050.1 SmLINC04475-IBu 0.80 3.00e-04 2.70e-03
Smp_204050.1 SmLINC04478-IBu 0.69 3.90e-03 1.73e-02
Smp_204050.1 SmLINC04481-IBu 0.52 4.59e-02 1.05e-01
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04250-IBu 0 6.51 7.95 8.09 9.23
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_204050.1 0 0.77 1.82 3.81 4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204050.1 SmLINC00282-IBu -0.82 1.00e-04 1.70e-03
Smp_204050.1 SmLINC02255-IBu -0.90 3.86e-06 1.00e-04
Smp_204050.1 SmLINC02657-IBu -0.95 2.02e-08 3.43e-06
Smp_204050.1 SmLINC04250-IBu 0.81 1.00e-04 2.20e-03
Smp_204050.1 SmLINC04475-IBu 0.80 3.00e-04 3.30e-03
Smp_204050.1 SmLINC05284-IBu -0.83 1.00e-04 1.60e-03
Smp_204050.1 SmLINC05632-IBu 0.82 1.00e-04 1.80e-03
Smp_204050.1 SmLINC06128-IBu -0.81 2.00e-04 2.40e-03
Smp_204050.1 SmLINC06535-IBu -0.87 1.88e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_204050.1 0 0.77 1.82 3.81 4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_204050.1 Smp_035090.2 -0.91 1.86e-06 8.29e-05
Smp_204050.1 Smp_157140.1 0.91 1.68e-06 7.71e-05