Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_203990.1 Data

Correlation between Smp_203990.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_203990.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_203990.1 0 0.81 0.18 -4.26 -4.99

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203990.1 SmLINC00026-IBu 0.83 9.94e-05 1.40e-03
Smp_203990.1 SmLINC00294-IBu 0.80 3.00e-04 3.20e-03
Smp_203990.1 SmLINC01084-IBu -0.81 2.00e-04 2.60e-03
Smp_203990.1 SmLINC01429-IBu 0.81 2.00e-04 2.40e-03
Smp_203990.1 SmLINC01979-IBu 0.88 1.37e-05 3.00e-04
Smp_203990.1 SmLINC02646-IBu 0.84 8.58e-05 1.20e-03
Smp_203990.1 SmLINC03111-IBu 0.85 5.99e-05 9.00e-04
Smp_203990.1 SmLINC03395-IBu 0.83 9.45e-05 1.30e-03
Smp_203990.1 SmLINC03443-IBu 0.88 1.35e-05 3.00e-04
Smp_203990.1 SmLINC03849-IBu 0.81 2.00e-04 2.40e-03
Smp_203990.1 SmLINC04074-IBu 0.82 1.00e-04 1.90e-03
Smp_203990.1 SmLINC04129-IBu 0.80 3.00e-04 3.30e-03
Smp_203990.1 SmLINC04271-IBu 0.82 1.00e-04 1.80e-03
Smp_203990.1 SmLINC06024-IBu -0.84 8.78e-05 1.20e-03
Smp_203990.1 SmLINC06490-IBu 0.81 2.00e-04 2.50e-03

Correlation between Smp_203990.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data