Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_203840.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203840.1 SmLINC05404-IBu -0.6 1.61e-02 4.91e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203840.1 SmLINC00001-IBu -0.80 3.00e-04 3.20e-03
Smp_203840.1 SmLINC00004-IBu -0.82 1.00e-04 2.10e-03
Smp_203840.1 SmLINC00294-IBu 0.82 1.00e-04 2.00e-03
Smp_203840.1 SmLINC00369-IBu -0.84 8.31e-05 1.20e-03
Smp_203840.1 SmLINC00525-IBu -0.85 3.99e-05 7.00e-04
Smp_203840.1 SmLINC00556-IBu 0.81 1.00e-04 2.30e-03
Smp_203840.1 SmLINC01084-IBu -0.87 1.59e-05 3.00e-04
Smp_203840.1 SmLINC01122-IBu -0.80 3.00e-04 3.30e-03
Smp_203840.1 SmLINC01431-IBu -0.86 3.74e-05 6.00e-04
Smp_203840.1 SmLINC01569-IBu -0.80 3.00e-04 3.20e-03
Smp_203840.1 SmLINC02084-IBu -0.84 8.64e-05 1.20e-03
Smp_203840.1 SmLINC02255-IBu 0.85 5.99e-05 9.00e-04
Smp_203840.1 SmLINC02546-IBu -0.81 2.00e-04 2.70e-03
Smp_203840.1 SmLINC02630-IBu 0.80 3.00e-04 3.20e-03
Smp_203840.1 SmLINC02657-IBu 0.81 2.00e-04 2.60e-03
Smp_203840.1 SmLINC03849-IBu 0.94 1.53e-07 1.38e-05
Smp_203840.1 SmLINC04421-IBu -0.84 7.77e-05 1.10e-03
Smp_203840.1 SmLINC04521-IBu -0.80 2.00e-04 2.80e-03
Smp_203840.1 SmLINC05147-IBu -0.80 3.00e-04 3.20e-03
Smp_203840.1 SmLINC05289-IBu -0.80 3.00e-04 3.30e-03
Smp_203840.1 SmLINC05604-IBu -0.80 3.00e-04 3.10e-03
Smp_203840.1 SmLINC05720-IBu 0.80 2.00e-04 2.70e-03
Smp_203840.1 SmLINC06024-IBu -0.83 1.00e-04 1.50e-03
Smp_203840.1 SmLINC06535-IBu 0.81 1.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_203800.1 0 0.03 -0.31 -15.15 -10.99
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048260.1 Smp_203840.1 0.92 1.11e-06 5.74e-05
Smp_203840.1 Smp_052280.2 -0.90 3.66e-06 1.00e-04
Smp_203840.1 Smp_160230.1 0.90 3.29e-06 1.00e-04
Smp_203800.1 Smp_203840.1 0.91 2.16e-06 9.18e-05
Smp_203840.1 Smp_206250.1 0.92 6.04e-07 3.74e-05