Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_203800.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_203800.1 0 0.03 -0.31 -15.15 -10.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203800.1 SmLINC00294-IBu 0.80 3.00e-04 3.20e-03
Smp_203800.1 SmLINC02657-IBu 0.81 2.00e-04 2.40e-03
Smp_203800.1 SmLINC03849-IBu 0.93 3.81e-07 2.60e-05
Smp_203800.1 SmLINC06535-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
Smp_009310.5 0 -1.32 -2.35 -7.94 -8.31
Smp_053760.1 0 0.29 -0.47 -5.24 -5.60
Smp_149200.1 0 -0.55 -1.34 -4.23 -7.36
Smp_181730.1 0 -0.37 -1.35 -5.07 -5.51
Smp_203800.1 0 0.03 -0.31 -15.15 -10.99
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84
Smp_205520.1 0 0.47 -0.17 -3.17 -3.98
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203800.1 SmLINC03849-IBu 0.93 3.81e-07 2.72e-05
Smp_203800.1 Smp_009310.5 0.93 2.29e-07 1.91e-05
Smp_203800.1 Smp_053760.1 0.90 4.08e-06 1.00e-04
Smp_203800.1 Smp_149200.1 0.90 3.21e-06 1.00e-04
Smp_203800.1 Smp_181730.1 0.94 1.06e-07 1.13e-05
Smp_203800.1 Smp_203840.1 0.91 2.16e-06 9.18e-05
Smp_203800.1 Smp_205520.1 0.93 4.69e-07 3.14e-05
Smp_203800.1 Smp_206090.1 0.93 4.04e-07 2.83e-05