Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_203780.1 Data

Correlation between Smp_203780.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_203780.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_203780.1 0 -0.56 -2.16 2.17 3.14

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203780.1 SmLINC00001-IBu 0.91 1.41e-06 6.57e-05
Smp_203780.1 SmLINC00004-IBu 0.92 6.24e-07 3.67e-05
Smp_203780.1 SmLINC00369-IBu 0.90 4.47e-06 1.00e-04
Smp_203780.1 SmLINC00525-IBu 0.89 5.02e-06 1.00e-04
Smp_203780.1 SmLINC00633-IBu 0.83 1.00e-04 1.50e-03
Smp_203780.1 SmLINC01084-IBu 0.91 1.41e-06 6.56e-05
Smp_203780.1 SmLINC01122-IBu 0.87 1.66e-05 3.00e-04
Smp_203780.1 SmLINC01431-IBu 0.91 2.50e-06 9.85e-05
Smp_203780.1 SmLINC01432-IBu 0.87 1.82e-05 4.00e-04
Smp_203780.1 SmLINC01538-IBu 0.80 2.00e-04 3.10e-03
Smp_203780.1 SmLINC01569-IBu 0.86 3.92e-05 7.00e-04
Smp_203780.1 SmLINC01733-IBu 0.83 9.81e-05 1.30e-03
Smp_203780.1 SmLINC02084-IBu 0.85 5.18e-05 8.00e-04
Smp_203780.1 SmLINC02376-IBu 0.82 1.00e-04 2.10e-03
Smp_203780.1 SmLINC02394-IBu 0.90 4.50e-06 1.00e-04
Smp_203780.1 SmLINC02539-IBu 0.84 7.40e-05 1.10e-03
Smp_203780.1 SmLINC02577-IBu 0.80 3.00e-04 3.40e-03
Smp_203780.1 SmLINC03326-IBu 0.80 3.00e-04 3.30e-03
Smp_203780.1 SmLINC03849-IBu -0.80 3.00e-04 3.10e-03
Smp_203780.1 SmLINC03927-IBu 0.81 2.00e-04 2.70e-03
Smp_203780.1 SmLINC04235-IBu 0.84 8.51e-05 1.20e-03
Smp_203780.1 SmLINC04421-IBu 0.93 2.54e-07 1.96e-05
Smp_203780.1 SmLINC04423-IBu 0.92 6.93e-07 3.95e-05
Smp_203780.1 SmLINC04478-IBu 0.90 2.86e-06 1.00e-04
Smp_203780.1 SmLINC04521-IBu 0.90 3.03e-06 1.00e-04
Smp_203780.1 SmLINC05147-IBu 0.83 1.00e-04 1.60e-03
Smp_203780.1 SmLINC05274-IBu -0.84 8.19e-05 1.20e-03
Smp_203780.1 SmLINC05289-IBu 0.92 5.17e-07 3.22e-05
Smp_203780.1 SmLINC05604-IBu 0.92 1.11e-06 5.54e-05
Smp_203780.1 SmLINC06024-IBu 0.93 2.84e-07 2.12e-05
Smp_203780.1 SmLINC06145-IBu 0.92 1.18e-06 5.79e-05
Smp_203780.1 SmLINC06490-IBu -0.88 1.33e-05 3.00e-04

Correlation between Smp_203780.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_203780.1 0 -0.56 -2.16 2.17 3.14
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203780.1 Smp_015850.2 -0.90 3.37e-06 1.00e-04
Smp_203780.1 Smp_024180.1 0.97 1.92e-09 7.74e-07
Smp_024180.2 Smp_203780.1 0.98 1.01e-10 1.17e-07
Smp_033260.1 Smp_203780.1 0.97 1.48e-09 6.56e-07
Smp_038870.2 Smp_203780.1 0.95 2.60e-08 4.34e-06
Smp_203780.1 Smp_040970.2 0.93 2.38e-07 1.96e-05
Smp_050350.3 Smp_203780.1 0.96 1.40e-08 2.87e-06
Smp_203780.1 Smp_052280.2 0.92 7.38e-07 4.31e-05
Smp_056460.1 Smp_203780.1 0.93 2.02e-07 1.75e-05
Smp_203780.1 Smp_079420.1 0.96 1.25e-08 2.65e-06
Smp_090140.1 Smp_203780.1 0.91 2.49e-06 1.00e-04
Smp_203780.1 Smp_094050.1 0.96 1.04e-08 2.34e-06
Smp_203780.1 Smp_137000.2 0.93 2.87e-07 2.23e-05
Smp_203780.1 Smp_155570.1 0.91 1.78e-06 8.01e-05
Smp_203780.1 Smp_156930.1 0.95 2.66e-08 4.41e-06
Smp_203780.1 Smp_172960.1 0.90 4.35e-06 1.00e-04
Smp_203780.1 Smp_192780.1 0.90 3.15e-06 1.00e-04
Smp_194860.1 Smp_203780.1 0.93 2.38e-07 1.96e-05
Smp_203780.1 Smp_201910.1 0.95 3.93e-08 5.74e-06
Smp_203090.1 Smp_203780.1 0.92 6.09e-07 3.77e-05
Smp_212510.1 Smp_203780.1 -0.90 4.13e-06 1.00e-04