Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_203550.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_203550.1 0 6.10 1.47 2.03 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203550.1 SmLINC00026-IBu 0.82 1.00e-04 2.00e-03
Smp_203550.1 SmLINC00787-IBu 0.92 5.67e-07 3.43e-05
Smp_203550.1 SmLINC00893-IBu 0.84 7.04e-05 1.00e-03
Smp_203550.1 SmLINC01230-IBu 0.95 3.20e-08 4.70e-06
Smp_203550.1 SmLINC01429-IBu 0.90 3.01e-06 1.00e-04
Smp_203550.1 SmLINC03111-IBu 0.87 1.60e-05 3.00e-04
Smp_203550.1 SmLINC03116-IBu 0.95 3.74e-08 5.23e-06
Smp_203550.1 SmLINC03406-IBu 0.81 2.00e-04 2.60e-03
Smp_203550.1 SmLINC03443-IBu 0.89 4.88e-06 1.00e-04
Smp_203550.1 SmLINC04129-IBu 0.88 8.84e-06 2.00e-04
Smp_203550.1 SmLINC04144-IBu 0.99 1.42e-12 7.44e-09
Smp_203550.1 SmLINC04178-IBu 0.87 2.33e-05 4.00e-04
Smp_203550.1 SmLINC04693-IBu 0.88 1.25e-05 3.00e-04
Smp_203550.1 SmLINC04940-IBu 0.81 2.00e-04 2.70e-03
Smp_203550.1 SmLINC05178-IBu 0.92 5.42e-07 3.33e-05
Smp_203550.1 SmLINC05840-IBu 0.93 3.98e-07 2.68e-05
Smp_203550.1 SmLINC05887-IBu 0.88 9.80e-06 2.00e-04
Smp_203550.1 SmLINC05888-IBu 0.84 6.69e-05 1.00e-03
Smp_203550.1 SmLINC06138-IBu 0.93 4.53e-07 2.93e-05
Smp_203550.1 SmLINC06436-IBu 0.98 6.74e-11 8.30e-08
Smp_203550.1 SmLINC06667-IBu 0.84 6.95e-05 1.00e-03
Smp_203550.1 SmLINC06669-IBu 0.91 2.13e-06 8.78e-05