Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_203400.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_203400.1 0 1.56 0.55 -7.76 -4.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203400.1 SmLINC00787-IBu 0.84 8.81e-05 1.20e-03
Smp_203400.1 SmLINC01230-IBu 0.82 1.00e-04 2.00e-03
Smp_203400.1 SmLINC01429-IBu 0.90 4.24e-06 1.00e-04
Smp_203400.1 SmLINC01979-IBu 0.88 1.49e-05 3.00e-04
Smp_203400.1 SmLINC03111-IBu 0.81 2.00e-04 2.50e-03
Smp_203400.1 SmLINC03116-IBu 0.85 3.96e-05 7.00e-04
Smp_203400.1 SmLINC04693-IBu 0.82 1.00e-04 1.70e-03
Smp_203400.1 SmLINC06646-IBu 0.90 4.23e-06 1.00e-04
Smp_203400.1 SmLINC06667-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_203400.1 0 1.56 0.55 -7.76 -4.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203400.1 Smp_024140.1 0.93 2.12e-07 1.81e-05