Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_203390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_203390.1 0 1.08 3.39 4.79 4.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203390.1 SmLINC00282-IBu -0.81 2.00e-04 2.70e-03
Smp_203390.1 SmLINC00554-IBu -0.82 1.00e-04 1.80e-03
Smp_203390.1 SmLINC02255-IBu -0.84 7.98e-05 1.20e-03
Smp_203390.1 SmLINC02657-IBu -0.85 4.13e-05 7.00e-04
Smp_203390.1 SmLINC04432-IBu 0.83 1.00e-04 1.60e-03
Smp_203390.1 SmLINC04475-IBu 0.87 2.01e-05 4.00e-04
Smp_203390.1 SmLINC05632-IBu 0.91 1.43e-06 6.63e-05
Smp_203390.1 SmLINC05870-IBu 0.88 1.15e-05 2.00e-04
Smp_203390.1 SmLINC05990-IBu 0.82 1.00e-04 1.90e-03
Smp_203390.1 SmLINC06128-IBu -0.84 7.37e-05 1.10e-03
Smp_203390.1 SmLINC06221-IBu 0.83 1.00e-04 1.50e-03
Smp_203390.1 SmLINC06535-IBu -0.84 8.42e-05 1.20e-03
Smp_203390.1 SmLINC06903-IBu -0.81 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_203390.1 0 1.08 3.39 4.79 4.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 Smp_203390.1 0.9 2.55e-06 1.00e-04
Smp_129110.1 Smp_203390.1 0.9 3.88e-06 1.00e-04
Smp_176430.2 Smp_203390.1 0.9 3.93e-06 1.00e-04