Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_203380.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203380.1 SmLINC00784-IBu 0.89 4.89e-06 1.00e-04
Smp_203380.1 SmLINC05720-IBu 0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05663-IBu 0 0.72 -2.30 -7.21 -6.28
Smp_092580.1 0 0.49 -1.03 -3.40 -6.43
Smp_117000.1 0 1.20 -0.81 -7.47 -8.86
Smp_178890.1 0 0.36 -2.67 -7.83 -7.83
Smp_183080.1 0 1.61 -2.18 -8.70 -8.70
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32
Smp_183790.1 0 1.84 -0.43 -2.43 -5.81
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_187950.1 0 -0.66 -4.01 -6.21 -6.21
Smp_194870.1 0 -0.08 -1.47 -5.35 -6.77
Smp_200510.1 0 -0.08 -3.12 -8.78 -8.58
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_203380.1 SmLINC05663-IBu 0.91 1.26e-06 6.28e-05
Smp_092580.1 Smp_203380.1 0.93 5.13e-07 3.34e-05
Smp_203380.1 Smp_117000.1 0.92 1.04e-06 5.50e-05
Smp_203380.1 Smp_178890.1 0.96 6.81e-09 1.77e-06
Smp_183080.1 Smp_203380.1 0.96 5.79e-09 1.59e-06
Smp_183570.1 Smp_203380.1 0.93 1.95e-07 1.71e-05
Smp_183790.1 Smp_203380.1 0.96 2.83e-09 9.97e-07
Smp_184760.1 Smp_203380.1 0.90 3.09e-06 1.00e-04
Smp_187950.1 Smp_203380.1 0.91 2.11e-06 9.04e-05
Smp_194870.1 Smp_203380.1 0.93 4.81e-07 3.19e-05
Smp_200510.1 Smp_203380.1 0.97 3.82e-10 2.75e-07
Smp_203100.1 Smp_203380.1 0.99 1.09e-13 1.69e-09