Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202990.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
Smp_202990.1 0 3.06 1.30 -2.66 -4.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202990.1 SmLINC04074-IBu 0.79 3.00e-04 3.00e-03
Smp_202990.1 SmLINC04075-IBu 0.60 1.60e-02 4.88e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_202990.1 0 3.06 1.30 -2.66 -4.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202990.1 SmLINC00787-IBu 0.95 2.69e-08 4.17e-06
Smp_202990.1 SmLINC01230-IBu 0.96 9.92e-09 2.12e-06
Smp_202990.1 SmLINC01429-IBu 0.96 2.37e-09 8.27e-07
Smp_202990.1 SmLINC01979-IBu 0.92 6.99e-07 3.98e-05
Smp_202990.1 SmLINC03111-IBu 0.96 1.22e-08 2.45e-06
Smp_202990.1 SmLINC03116-IBu 0.98 1.04e-11 2.56e-08
Smp_202990.1 SmLINC03443-IBu 0.91 2.20e-06 9.00e-05
Smp_202990.1 SmLINC04129-IBu 0.82 1.00e-04 2.10e-03
Smp_202990.1 SmLINC04144-IBu 0.96 7.54e-09 1.77e-06
Smp_202990.1 SmLINC04693-IBu 0.88 9.80e-06 2.00e-04
Smp_202990.1 SmLINC05178-IBu 0.84 6.18e-05 9.00e-04
Smp_202990.1 SmLINC05840-IBu 0.89 7.54e-06 2.00e-04
Smp_202990.1 SmLINC05887-IBu 0.82 1.00e-04 2.10e-03
Smp_202990.1 SmLINC06138-IBu 0.86 3.21e-05 6.00e-04
Smp_202990.1 SmLINC06436-IBu 0.95 3.12e-08 4.62e-06
Smp_202990.1 SmLINC06667-IBu 0.85 4.63e-05 8.00e-04
Smp_202990.1 SmLINC06669-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_202990.1 0 3.06 1.30 -2.66 -4.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202990.1 Smp_193700.1 0.91 1.40e-06 6.76e-05