Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202870.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_202870.1 0 0.00 1.49 6.01 7.06

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202870.1 SmLINC00004-IBu 0.80 2.00e-04 3.10e-03
Smp_202870.1 SmLINC02376-IBu 0.85 4.87e-05 8.00e-04
Smp_202870.1 SmLINC04423-IBu 0.88 1.26e-05 3.00e-04
Smp_202870.1 SmLINC06024-IBu 0.81 2.00e-04 2.50e-03
Smp_202870.1 SmLINC06145-IBu 0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202870.1 0 0.00 1.49 6.01 7.06

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202870.1 Smp_201910.1 0.94 1.35e-07 1.33e-05