Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202810.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
Smp_202810.1 0 -1.19 -0.95 6.48 7.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202810.1 SmLINC00004-IBu 0.84 7.47e-05 1.10e-03
Smp_202810.1 SmLINC00525-IBu 0.87 2.22e-05 4.00e-04
Smp_202810.1 SmLINC00633-IBu 0.81 2.00e-04 2.60e-03
Smp_202810.1 SmLINC01084-IBu 0.83 1.00e-04 1.60e-03
Smp_202810.1 SmLINC01432-IBu 0.92 7.78e-07 4.29e-05
Smp_202810.1 SmLINC02376-IBu 0.84 8.79e-05 1.20e-03
Smp_202810.1 SmLINC02545-IBu 0.84 8.02e-05 1.20e-03
Smp_202810.1 SmLINC03658-IBu 0.82 1.00e-04 1.90e-03
Smp_202810.1 SmLINC04235-IBu 0.84 8.85e-05 1.20e-03
Smp_202810.1 SmLINC04421-IBu 0.91 1.51e-06 6.88e-05
Smp_202810.1 SmLINC04423-IBu 0.92 6.16e-07 3.64e-05
Smp_202810.1 SmLINC04478-IBu 0.85 5.56e-05 9.00e-04
Smp_202810.1 SmLINC04896-IBu 0.84 7.79e-05 1.10e-03
Smp_202810.1 SmLINC05147-IBu 0.80 3.00e-04 3.40e-03
Smp_202810.1 SmLINC05604-IBu 0.91 1.26e-06 6.06e-05
Smp_202810.1 SmLINC06024-IBu 0.87 1.52e-05 3.00e-04
Smp_202810.1 SmLINC06239-IBu 0.82 1.00e-04 1.90e-03
Smp_202810.1 SmLINC06415-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202810.1 0 -1.19 -0.95 6.48 7.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202810.1 Smp_156930.1 0.91 2.15e-06 9.16e-05
Smp_202810.1 Smp_201910.1 0.96 4.21e-09 1.29e-06