Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202780.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202780.1 SmLINC00787-IBu 0.92 9.49e-07 4.94e-05
Smp_202780.1 SmLINC01230-IBu 0.93 4.75e-07 3.03e-05
Smp_202780.1 SmLINC01429-IBu 0.89 7.38e-06 2.00e-04
Smp_202780.1 SmLINC03116-IBu 0.90 3.97e-06 1.00e-04
Smp_202780.1 SmLINC04129-IBu 0.80 3.00e-04 3.20e-03
Smp_202780.1 SmLINC04144-IBu 0.89 5.04e-06 1.00e-04
Smp_202780.1 SmLINC04693-IBu 0.83 1.00e-04 1.50e-03
Smp_202780.1 SmLINC05178-IBu 0.83 1.00e-04 1.60e-03
Smp_202780.1 SmLINC05840-IBu 0.88 1.49e-05 3.00e-04
Smp_202780.1 SmLINC06138-IBu 0.83 8.97e-05 1.30e-03
Smp_202780.1 SmLINC06436-IBu 0.89 8.34e-06 2.00e-04
Smp_202780.1 SmLINC06667-IBu 0.84 7.24e-05 1.10e-03