Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_202690.1 Data

Correlation between Smp_202690.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_202690.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_202690.1 0 2.99 3.08 5.69 6.36

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202690.1 SmLINC00004-IBu 0.81 2.00e-04 2.50e-03
Smp_202690.1 SmLINC00266-IBu 0.82 1.00e-04 1.80e-03
Smp_202690.1 SmLINC00282-IBu -0.83 1.00e-04 1.50e-03
Smp_202690.1 SmLINC00369-IBu 0.84 8.47e-05 1.20e-03
Smp_202690.1 SmLINC00376-IBu 0.86 3.60e-05 6.00e-04
Smp_202690.1 SmLINC00525-IBu 0.81 1.00e-04 2.30e-03
Smp_202690.1 SmLINC00548-IBu 0.80 2.00e-04 3.00e-03
Smp_202690.1 SmLINC00633-IBu 0.82 1.00e-04 1.70e-03
Smp_202690.1 SmLINC01084-IBu 0.83 9.40e-05 1.30e-03
Smp_202690.1 SmLINC01122-IBu 0.81 2.00e-04 2.60e-03
Smp_202690.1 SmLINC01171-IBu 0.80 3.00e-04 3.20e-03
Smp_202690.1 SmLINC01431-IBu 0.86 3.82e-05 7.00e-04
Smp_202690.1 SmLINC01432-IBu 0.81 2.00e-04 2.50e-03
Smp_202690.1 SmLINC01569-IBu 0.81 1.00e-04 2.20e-03
Smp_202690.1 SmLINC02084-IBu 0.86 3.73e-05 6.00e-04
Smp_202690.1 SmLINC02255-IBu -0.95 1.85e-08 3.24e-06
Smp_202690.1 SmLINC02545-IBu 0.82 1.00e-04 1.70e-03
Smp_202690.1 SmLINC02546-IBu 0.82 1.00e-04 2.10e-03
Smp_202690.1 SmLINC02630-IBu -0.89 7.24e-06 2.00e-04
Smp_202690.1 SmLINC02657-IBu -0.96 6.02e-09 1.52e-06
Smp_202690.1 SmLINC03108-IBu 0.81 1.00e-04 2.30e-03
Smp_202690.1 SmLINC03236-IBu 0.80 2.00e-04 2.70e-03
Smp_202690.1 SmLINC03693-IBu 0.82 1.00e-04 1.80e-03
Smp_202690.1 SmLINC03769-IBu -0.81 2.00e-04 2.70e-03
Smp_202690.1 SmLINC03849-IBu -0.81 2.00e-04 2.40e-03
Smp_202690.1 SmLINC03927-IBu 0.86 3.36e-05 6.00e-04
Smp_202690.1 SmLINC04421-IBu 0.88 9.34e-06 2.00e-04
Smp_202690.1 SmLINC04478-IBu 0.80 2.00e-04 3.10e-03
Smp_202690.1 SmLINC04521-IBu 0.81 2.00e-04 2.70e-03
Smp_202690.1 SmLINC04684-IBu 0.81 2.00e-04 2.60e-03
Smp_202690.1 SmLINC05147-IBu 0.81 2.00e-04 2.40e-03
Smp_202690.1 SmLINC05284-IBu -0.87 1.70e-05 3.00e-04
Smp_202690.1 SmLINC05604-IBu 0.83 1.00e-04 1.50e-03
Smp_202690.1 SmLINC05989-IBu -0.81 2.00e-04 2.70e-03
Smp_202690.1 SmLINC06128-IBu -0.83 1.00e-04 1.60e-03
Smp_202690.1 SmLINC06221-IBu 0.81 1.00e-04 2.20e-03
Smp_202690.1 SmLINC06415-IBu 0.81 1.00e-04 2.20e-03
Smp_202690.1 SmLINC06535-IBu -0.90 2.65e-06 1.00e-04
Smp_202690.1 SmLINC06543-IBu 0.81 2.00e-04 2.70e-03

Correlation between Smp_202690.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_130790.1 0 8.99 8.69 10.99 11.23
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_202690.1 0 2.99 3.08 5.69 6.36

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202690.1 Smp_035090.2 -0.92 6.08e-07 3.76e-05
Smp_051210.3 Smp_202690.1 0.90 4.40e-06 1.00e-04
Smp_052280.2 Smp_202690.1 0.90 2.67e-06 1.00e-04
Smp_055340.2 Smp_202690.1 0.94 1.91e-07 1.69e-05
Smp_130790.1 Smp_202690.1 0.90 3.76e-06 1.00e-04
Smp_157140.1 Smp_202690.1 0.92 6.53e-07 3.96e-05
Smp_202690.1 Smp_160230.1 -0.91 1.43e-06 6.87e-05