Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202540.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_202540.1 0 -2.41 -1.38 -6.47 -8.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202540.1 SmLINC06892-IBu 0.84 8.26e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_202540.1 0 -2.41 -1.38 -6.47 -8.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202540.1 Smp_032990.1 0.91 2.21e-06 9.35e-05
Smp_202540.1 Smp_116760.1 0.92 5.78e-07 3.63e-05
Smp_183020.1 Smp_202540.1 0.94 6.96e-08 8.45e-06
Smp_202540.1 Smp_183020.6 0.94 6.96e-08 8.45e-06
Smp_202540.1 Smp_186130.2 0.91 2.32e-06 9.67e-05