Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202340.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_202340.1 0 0.90 1.72 -6.17 -6.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202340.1 SmLINC00294-IBu 0.84 6.09e-05 9.00e-04
Smp_202340.1 SmLINC00525-IBu -0.83 9.46e-05 1.30e-03
Smp_202340.1 SmLINC01084-IBu -0.85 5.76e-05 9.00e-04
Smp_202340.1 SmLINC01431-IBu -0.80 2.00e-04 3.00e-03
Smp_202340.1 SmLINC03395-IBu 0.89 8.70e-06 2.00e-04
Smp_202340.1 SmLINC04074-IBu 0.85 5.09e-05 8.00e-04
Smp_202340.1 SmLINC06024-IBu -0.87 1.58e-05 3.00e-04
Smp_202340.1 SmLINC06489-IBu 0.85 4.43e-05 7.00e-04
Smp_202340.1 SmLINC06490-IBu 0.91 1.34e-06 6.35e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_202340.1 0 0.90 1.72 -6.17 -6.91
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 Smp_202340.1 0.94 1.00e-07 1.08e-05
Smp_202340.1 Smp_184180.1 0.93 3.02e-07 2.32e-05
Smp_212510.1 Smp_202340.1 0.92 7.65e-07 4.42e-05