Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_202260.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_202260.1 0 -1.57 -6.78 0.16 1.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202260.1 SmLINC00004-IBu 0.80 2.00e-04 2.80e-03
Smp_202260.1 SmLINC01316-IBu -0.86 2.74e-05 5.00e-04
Smp_202260.1 SmLINC02646-IBu -0.81 1.00e-04 2.30e-03
Smp_202260.1 SmLINC04423-IBu 0.83 1.00e-04 1.50e-03
Smp_202260.1 SmLINC04478-IBu 0.80 2.00e-04 2.90e-03
Smp_202260.1 SmLINC04521-IBu 0.80 2.00e-04 3.00e-03
Smp_202260.1 SmLINC06024-IBu 0.84 6.30e-05 1.00e-03
Smp_202260.1 SmLINC06145-IBu 0.82 1.00e-04 1.70e-03
Smp_202260.1 SmLINC06490-IBu -0.90 4.00e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_202260.1 0 -1.57 -6.78 0.16 1.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202260.1 Smp_168800.1 -0.91 2.38e-06 9.85e-05